WormBase Tree Display for Gene: WBGene00000678
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WBGene00000678 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | F58F6 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-104 | Person_evidence | WBPerson345 | |||||
Sequence_name | F58F6.1 | ||||||||
Molecular_name | F58F6.1 | ||||||||
F58F6.1.1 | |||||||||
CE17136 | |||||||||
Other_name | CELE_F58F6.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | col-104 | ||||||||
DB_info | Database | AceView | gene | 4C118 | |||||
WormQTL | gene | WBGene00000678 | |||||||
WormFlux | gene | WBGene00000678 | |||||||
NDB | locus_tag | CELE_F58F6.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000678|UniProtKB=O44174 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 176947 | |||||||
RefSeq | protein | NM_067669.5 | |||||||
TREEFAM | TREEFAM_ID | TF316943 | |||||||
TrEMBL | UniProtAcc | O44174 | |||||||
UniProt_GCRP | UniProtAcc | O44174 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (66) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00032144 | ||||||||
00032145 | |||||||||
00032146 | |||||||||
00107672 | |||||||||
Ortholog (34) | |||||||||
Paralog (162) | |||||||||
Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00033111 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00049020 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015992 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1029127 | ||||||||
Expr1030403 | |||||||||
Expr1152759 | |||||||||
Expr2010302 | |||||||||
Expr2028545 | |||||||||
Drives_construct | WBCnstr00037375 | ||||||||
Construct_product | WBCnstr00037375 | ||||||||
Microarray_results | SMD_F58F6.1 | ||||||||
189797_s_at | |||||||||
A_12_P118021 | |||||||||
Aff_F58F6.1 | |||||||||
GPL13394_WBGene00000678 | |||||||||
GPL13914_F58F6.1 | |||||||||
GPL14144_F58F6.1_363-422_0.937_1_A | |||||||||
GPL14144_F58F6.1_518-577_0.800_20_C | |||||||||
GPL14144_F58F6.1_788-847_0.926_4_B | |||||||||
GPL19516_CGZ0025279 | |||||||||
GPL21109_F58F6.1 | |||||||||
GPL3518_CE17136 | |||||||||
GPL8304_CE_WBGene00000678_A | |||||||||
GPL8673_F58F6_1P00041 | |||||||||
GPL8673_F58F6_1P00216 | |||||||||
GPL8673_F58F6_1P00681 | |||||||||
GPL9450_F58F6.1 | |||||||||
cea2.p.94470 | |||||||||
Expression_cluster (322) | |||||||||
Interaction (172) | |||||||||
Map_info | Map | IV | Position | -20.0641 | Error | 0.09975 | |||
Positive | Positive_clone | F58F6 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |