WormBase Tree Display for Gene: WBGene00000617
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WBGene00000617 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | T13B5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-40 | Person_evidence | WBPerson345 | |||||
Sequence_name | T13B5.4 | ||||||||
Molecular_name | T13B5.4 | ||||||||
T13B5.4.1 | |||||||||
CE45752 | |||||||||
Other_name | CELE_T13B5.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | col-40 | ||||||||
DB_info | Database | AceView | gene | 2B396 | |||||
WormQTL | gene | WBGene00000617 | |||||||
WormFlux | gene | WBGene00000617 | |||||||
NDB | locus_tag | CELE_T13B5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000617|UniProtKB=P34804 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 173495 | |||||||
RefSeq | protein | NM_061512.5 | |||||||
SwissProt | UniProtAcc | P34804 | |||||||
UniProt_GCRP | UniProtAcc | P34804 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (49) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes 292 aa collagen, col-6 family. Transcript present L1, L2-dauer, not L2. [Levy and Kramer 1993] | ||||||||
Strain | WBStrain00055290 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00044553 | ||||||||
00044554 | |||||||||
00044555 | |||||||||
00044556 | |||||||||
00044557 | |||||||||
00044558 | |||||||||
00107626 | |||||||||
Ortholog (32) | |||||||||
Paralog (66) | |||||||||
Structured_description | Concise_description | col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt. | Paper_evidence | WBPaper00001905 | |||||
WBPaper00001918 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T13B5.4 | |||||||
Corresponding_CDS_history | T13B5.4:wp223 | ||||||||
Corresponding_transcript | T13B5.4.1 | ||||||||
Other_sequence (16) | |||||||||
Associated_feature | WBsf986574 | ||||||||
WBsf1011484 | |||||||||
WBsf222665 | |||||||||
Experimental_info | RNAi_result | WBRNAi00018662 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053246 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr620 | ||||||||
Expr14471 | |||||||||
Expr1024690 | |||||||||
Expr1030362 | |||||||||
Expr1156830 | |||||||||
Expr2010393 | |||||||||
Expr2028635 | |||||||||
Drives_construct | WBCnstr00040896 | ||||||||
Microarray_results | SMD_T13B5.4 | ||||||||
189873_at | |||||||||
A_12_P159780 | |||||||||
Aff_T13B5.4 | |||||||||
GPL14144_T13B5.4_184-243_0.857_6_B | |||||||||
GPL14144_T13B5.4_414-473_0.457_122_C | |||||||||
GPL14144_T13B5.4_84-143_0.658_88_A | |||||||||
GPL19516_CGZ0034993 | |||||||||
GPL21109_T13B5.4 | |||||||||
GPL3518_CE13609 | |||||||||
GPL8673_T13B5_4P00053 | |||||||||
GPL8673_T13B5_4P00262 | |||||||||
GPL9450_T13B5.4 | |||||||||
cea2.p.46819 | |||||||||
Expression_cluster (91) | |||||||||
Interaction (96) | |||||||||
Map_info | Map | II | Position | -15.5684 | |||||
Positive | Positive_clone | T13B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (9) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |