WormBase Tree Display for Gene: WBGene00007400

WBGene00007400 SMap: S_parent: Sequence: C07A9
  Identity: Version: 2
    Name: CGC_name: bud-31
      Sequence_name: C07A9.2
      Molecular_name: C07A9.2
        C07A9.2.1
        CE00499
        C07A9.2.2
      Other_name: 3J784 Accession_evidence: EMBL AF303257
        CELE_C07A9.2 Accession_evidence: NDB BX284603
      Public_name: bud-31
    DB_info: Database: AceView gene 3K784
        WormQTL gene WBGene00007400
        WormFlux gene WBGene00007400
        NDB locus_tag CELE_C07A9.2
        Panther gene CAEEL|WormBase=WBGene00007400|UniProtKB=P34313
          family PTHR19411
        NCBI gene 176368
        RefSeq protein NM_001379868.1
        SwissProt UniProtAcc P34313
        TREEFAM TREEFAM_ID TF105609
        UniProt_GCRP UniProtAcc P34313
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 05 Apr 2017 11:17:23 WBPerson2970 Name_change: CGC_name: bud-31
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bud
    Allele (27)
    Strain: WBStrain00051144
    RNASeq_FPKM (74)
    GO_annotation: 00041550
      00041551
      00041552
      00041553
      00041554
      00041555
      00041556
      00115537
    Contained_in_operon: CEOP3612
    Ortholog (34)
    Structured_description: Automated_description: Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is an ortholog of human BUD31 (BUD31 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C07A9.2
    Corresponding_transcript: C07A9.2.1
      C07A9.2.2
    Other_sequence: Tcir_isotig06375
      PPC03740_1
      FG588098.1
      MHC10585_1
      Tcol_isotig17959
      XIC05482_1
      LSC00366_1
      PPC08645_1
      MH05260
      RS07143
      GR10421
      FC820257.1
      RSC02447_1
      ACC33976_1
      HC04529
      SRC06474_1
      MP00286
      CBC05500_1
      DN557196.1
      HGC00844_1
      MH06756
      CSC01879_1
      DN557023.1
      MH04386
      ES560866.1
      MHC02854_1
      MC05052
      MC05205
      Tcir_isotig03683
      SR04917
      FD516334.1
      FG355472.1
      MCC05486_1
      XI04854
      Acan_isotig15695
      Acan_isotig15733
      MC05143
      FD517288.1
      FC542620.1
      MC04826
      ES562534.1
      BU086657.1
      Acan_isotig07230
      NAC01383_1
      Tcir_isotig03684
      MH07006
      HCC09610_1
      MC05116
      TS05596
      GRC00412_1
      Name_isotig05438
      Oden_isotig22322
      FG347279.1
      JI171638.1
      MH09340
      CRC06658_1
      SRC08849_1
      Dviv_isotig15001
      ACC21250_1
      MH09143
      TSC04307_1
      Tcir_isotig16640
      FC548707.1
      Name_isotig04886
      HG03034
      TSC05290_1
      MH06437
      MPC00614_1
      TS03948
      MC05439
      Tcir_isotig14841
      MC04866
      Dviv_isotig15000
      ES569523.1
    Associated_feature: WBsf651395
      WBsf651396
      WBsf667314
      WBsf667315
      WBsf667316
      WBsf993765
      WBsf993766
      WBsf1015654
      WBsf1015655
      WBsf227352
  Experimental_info: RNAi_result (24)
    Expr_pattern: Expr1015684
      Expr1033185
      Expr1144053
      Expr2009682
      Expr2027921
    Drives_construct: WBCnstr00033770
    Construct_product: WBCnstr00033770
    Microarray_results: SMD_C07A9.2
      173809_s_at
      A_12_P113580
      A_12_P157300
      A_12_P157301
      A_12_P157302
      A_12_P157303
      Aff_C07A9.2
      GPL13394_WBGene00007400
      GPL13914_C07A9.2
      GPL14144_C07A9.2_249-308_0.919_15_C
      GPL14144_C07A9.2_297-356_0.944_3_B
      GPL14144_C07A9.2_381-440_0.971_1_A
      GPL19516_CGZ0003155
      GPL19516_CGZ0003156
      GPL21109_C07A9.2.1
      GPL3518_CE00499
      GPL8304_CE_WBGene00007400_A
      GPL8673_C07A9_2P00038
      GPL8673_C07A9_2P00231
      GPL8673_C07A9_2P00318
      GPL9450_C07A9.2
      cea2.c.17055
    Expression_cluster (135)
    Interaction (102)
  Map_info: Map: III Position: 0.890235
    Positive: Positive_clone: C07A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00045396
    WBPaper00048493
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene