WormBase Tree Display for Gene: WBGene00004016
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| WBGene00004016 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | phf-5 | Person_evidence | WBPerson564 | |||||
| Sequence_name | Y54F10BM.14 | ||||||||
| Molecular_name | Y54F10BM.14 | ||||||||
| Y54F10BM.14.1 | |||||||||
| CE33882 | |||||||||
| Other_name | CELE_Y54F10BM.14 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | phf-5 | ||||||||
| DB_info | Database | AceView | gene | 3D429 | |||||
| WormQTL | gene | WBGene00004016 | |||||||
| WormFlux | gene | WBGene00004016 | |||||||
| NDB | locus_tag | CELE_Y54F10BM.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004016|UniProtKB=G5EBY6 | |||||||
| family | PTHR13120 | ||||||||
| NCBI | gene | 3564851 | |||||||
| RefSeq | protein | NM_001027738.2 | |||||||
| TREEFAM | TREEFAM_ID | TF105627 | |||||||
| TrEMBL | UniProtAcc | G5EBY6 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBY6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | phf | ||||||||
| Allele (119) | |||||||||
| Strain | WBStrain00006460 | ||||||||
| WBStrain00055484 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00010542 | ||||||||
| 00010543 | |||||||||
| 00010544 | |||||||||
| 00010545 | |||||||||
| 00010546 | |||||||||
| 00112195 | |||||||||
| Contained_in_operon | CEOP3075 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in mRNA splicing, via spliceosome. Located in cytoplasm and nucleus. Expressed in body wall musculature; intestine; pharyngeal muscle cell; pharynx; and rectal muscle. Is an ortholog of human PHF5A (PHD finger protein 5A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54F10BM.14 | |||||||
| Corresponding_transcript | Y54F10BM.14.1 | ||||||||
| Other_sequence | OOC03187_1 | ||||||||
| Oden_isotig13452 | |||||||||
| DA01892 | |||||||||
| Tcir_isotig05713 | |||||||||
| MJC00483_1 | |||||||||
| GP02355 | |||||||||
| XIC00995_1 | |||||||||
| Oden_isotig13453 | |||||||||
| NB07115 | |||||||||
| FG619985.1 | |||||||||
| AYC00259_1 | |||||||||
| XIC00996_1 | |||||||||
| GW408045.1 | |||||||||
| TSC05585_1 | |||||||||
| XI00316 | |||||||||
| TS02578 | |||||||||
| MP01096 | |||||||||
| PSC00817_1 | |||||||||
| HG02267 | |||||||||
| ASC11730_1 | |||||||||
| JI169577.1 | |||||||||
| Tcol_isotig08041 | |||||||||
| GPC02811_1 | |||||||||
| DAC00552_1 | |||||||||
| FG620056.1 | |||||||||
| Dviv_isotig16465 | |||||||||
| AS11517 | |||||||||
| RSC03766_1 | |||||||||
| GR15279 | |||||||||
| NBC02396_1 | |||||||||
| AS12657 | |||||||||
| RS08036 | |||||||||
| HGC00409_1 | |||||||||
| MHC00498_1 | |||||||||
| Tcol_isotig08042 | |||||||||
| Dviv_isotig16464 | |||||||||
| JI466538.1 | |||||||||
| ASC03057_1 | |||||||||
| MPC00993_1 | |||||||||
| AS10967 | |||||||||
| MIC07631_1 | |||||||||
| EX557827.1 | |||||||||
| BU666074.1 | |||||||||
| Acan_isotig02660 | |||||||||
| DA03439 | |||||||||
| NAC00823_1 | |||||||||
| HCC02069_1 | |||||||||
| DA01893 | |||||||||
| Name_isotig05492 | |||||||||
| Acan_isotig15489 | |||||||||
| GR11941 | |||||||||
| CBC12967_1 | |||||||||
| BXC03683_1 | |||||||||
| PPC09266_1 | |||||||||
| MH03416 | |||||||||
| ACC00006_1 | |||||||||
| HC03717 | |||||||||
| XI02179 | |||||||||
| HC09537 | |||||||||
| MI08257 | |||||||||
| AE01319 | |||||||||
| GR16772 | |||||||||
| MJ00972 | |||||||||
| Acan_isotig02659 | |||||||||
| AE01457 | |||||||||
| NB09994 | |||||||||
| Associated_feature | WBsf658509 | ||||||||
| WBsf991497 | |||||||||
| WBsf991498 | |||||||||
| WBsf1014393 | |||||||||
| WBsf224500 | |||||||||
| Transcription_factor | WBTranscriptionFactor000668 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00022700 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022702 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117630 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022701 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117629 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106641 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2000 | ||||||||
| Expr1024301 | |||||||||
| Expr1031923 | |||||||||
| Expr1160845 | |||||||||
| Expr2014897 | |||||||||
| Expr2033133 | |||||||||
| Drives_construct | WBCnstr00000421 | ||||||||
| WBCnstr00000431 | |||||||||
| Antibody | WBAntibody00000558 | ||||||||
| Microarray_results | A_12_P104804 | ||||||||
| GPL13394_WBGene00004016 | |||||||||
| GPL13914_Y54F10BM.14 | |||||||||
| GPL14144_Y54F10BM.14_109-168_0.862_12_C | |||||||||
| GPL14144_Y54F10BM.14_181-240_0.946_1_A | |||||||||
| GPL14144_Y54F10BM.14_256-315_0.929_3_B | |||||||||
| GPL19516_CGZ0049115 | |||||||||
| GPL21109_Y54F10BM.14 | |||||||||
| GPL8304_CE_WBGene00004016_A | |||||||||
| GPL8304_CE_WBGene00004016_B | |||||||||
| GPL8673_Y54F10BM_14P00034 | |||||||||
| GPL8673_Y54F10BM_14P00102 | |||||||||
| GPL8673_Y54F10BM_14P00146 | |||||||||
| GPL9450_Y54F10BM.1 | |||||||||
| cea2.i.22048 | |||||||||
| Expression_cluster (60) | |||||||||
| Interaction (97) | |||||||||
| Map_info | Map | III | Position | -14.7412 | Error | 0.009142 | |||
| Positive | Positive_clone | Y54F10BM | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005466 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | phf-5 was previously connected to Y54F10BM.1 [Blasiar D][030411 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
