WormBase Tree Display for Gene: WBGene00001725
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WBGene00001725 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y65B4BR | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | grl-16 | Person_evidence | WBPerson83 | |||||
Sequence_name | Y65B4BR.6 | ||||||||
Molecular_name | Y65B4BR.6a | ||||||||
Y65B4BR.6a.1 | |||||||||
CE25541 | |||||||||
Y65B4BR.6b | |||||||||
CE33240 | |||||||||
Y65B4BR.6b.1 | |||||||||
Other_name | Y65B4BR.m | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y65B4BR.6 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | grl-16 | ||||||||
DB_info | Database | AceView | gene | 1B46 | |||||
WormQTL | gene | WBGene00001725 | |||||||
WormFlux | gene | WBGene00001725 | |||||||
NDB | locus_tag | CELE_Y65B4BR.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001725|UniProtKB=H2L083 | |||||||
family | PTHR23261 | ||||||||
NCBI | gene | 171649 | |||||||
RefSeq | protein | NM_182075.3 | |||||||
NM_058353.6 | |||||||||
TREEFAM | TREEFAM_ID | TF315611 | |||||||
TrEMBL | UniProtAcc | Q9N2Z3 | |||||||
H2L083 | |||||||||
UniProt_GCRP | UniProtAcc | H2L083 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grl | ||||||||
Allele (84) | |||||||||
Strain | WBStrain00032865 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (21) | |||||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | grl-16 encodes, by alternative splicing, two hedgehog-like proteins withan N-terminal signal sequence, a central proline-rich low-complexityregion, and a C-terminal Ground-like (Grl) domain; the Grl domain ispredicted to form a cysteine-crosslinked protein involved inintercellular signalling, and it has subtle similarity to the N-terminalHedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including arc ant V; germ line; hypodermis; neurons; and rectal epithelial cell based on proteomic; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-four chemicals including hydrogen sulfide; 1-methylnicotinamide; and nicotinic acid based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y65B4BR.6a | |||||||
Y65B4BR.6b | |||||||||
Corresponding_CDS_history | Y65B4BR.6c:wp272 | ||||||||
Corresponding_transcript | Y65B4BR.6a.1 | ||||||||
Y65B4BR.6b.1 | |||||||||
Other_sequence | FG972218.1 | ||||||||
FG977706.1 | |||||||||
FG972691.1 | |||||||||
FG975614.1 | |||||||||
FF681120.1 | |||||||||
FG971556.1 | |||||||||
FG980972.1 | |||||||||
FG973907.1 | |||||||||
AAC00637_1 | |||||||||
AM744906.1 | |||||||||
FG977388.1 | |||||||||
HBC00085_1 | |||||||||
Dviv_isotig22224 | |||||||||
TDC02619_1 | |||||||||
FF681234.1 | |||||||||
FD517150.1 | |||||||||
FG975876.1 | |||||||||
FG978408.1 | |||||||||
CJC04698_1 | |||||||||
Tcol_isotig15652 | |||||||||
FG978688.1 | |||||||||
FG979280.1 | |||||||||
SRC01937_1 | |||||||||
CSC00259_1 | |||||||||
FG977739.1 | |||||||||
DVC00998_1 | |||||||||
FG980862.1 | |||||||||
FG975622.1 | |||||||||
HBC17664_1 | |||||||||
FG975563.1 | |||||||||
FG971683.1 | |||||||||
JI169647.1 | |||||||||
EX912790.1 | |||||||||
FG972698.1 | |||||||||
FG975312.1 | |||||||||
Oden_isotig24983 | |||||||||
FG978106.1 | |||||||||
FG975906.1 | |||||||||
FG973650.1 | |||||||||
DN190809.1 | |||||||||
FG976810.1 | |||||||||
FC810350.1 | |||||||||
FF681829.1 | |||||||||
FG975248.1 | |||||||||
FG976258.1 | |||||||||
FG978976.1 | |||||||||
FG975107.1 | |||||||||
FG973621.1 | |||||||||
Tcir_isotig08526 | |||||||||
FG980693.1 | |||||||||
FF681919.1 | |||||||||
HBC27871_1 | |||||||||
FG973533.1 | |||||||||
SR02593 | |||||||||
FG977397.1 | |||||||||
FG975347.1 | |||||||||
FG978000.1 | |||||||||
FC816855.1 | |||||||||
FG976839.1 | |||||||||
EV852283.1 | |||||||||
FG980146.1 | |||||||||
FG981115.1 | |||||||||
Hbac_isotig01096 | |||||||||
FD513974.1 | |||||||||
FG980520.1 | |||||||||
FF681318.1 | |||||||||
FG978059.1 | |||||||||
FD515237.1 | |||||||||
HBC03397_1 | |||||||||
FG972054.1 | |||||||||
FG978439.1 | |||||||||
FG980903.1 | |||||||||
FG973340.1 | |||||||||
FG975629.1 | |||||||||
FG975694.1 | |||||||||
FG973805.1 | |||||||||
HBC05752_1 | |||||||||
FG972693.1 | |||||||||
FG978623.1 | |||||||||
FF681654.1 | |||||||||
FF680777.1 | |||||||||
FG972761.1 | |||||||||
FF681415.1 | |||||||||
FG977301.1 | |||||||||
FG971605.1 | |||||||||
CSC01584_1 | |||||||||
FG973646.1 | |||||||||
FF681191.1 | |||||||||
CRC09913_1 | |||||||||
FG978034.1 | |||||||||
FF681907.1 | |||||||||
FG979193.1 | |||||||||
AM744923.1 | |||||||||
JI169589.1 | |||||||||
FK807943.1 | |||||||||
FG976176.1 | |||||||||
FF682212.1 | |||||||||
Associated_feature | WBsf648911 | ||||||||
WBsf663874 | |||||||||
WBsf717443 | |||||||||
WBsf982538 | |||||||||
WBsf982539 | |||||||||
WBsf982540 | |||||||||
WBsf1009099 | |||||||||
WBsf1009100 | |||||||||
WBsf218920 | |||||||||
Experimental_info | RNAi_result | WBRNAi00037711 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr4423 | ||||||||
Expr1018184 | |||||||||
Expr1031030 | |||||||||
Expr1161350 | |||||||||
Expr2012250 | |||||||||
Expr2030486 | |||||||||
Drives_construct | WBCnstr00011985 | ||||||||
WBCnstr00036736 | |||||||||
Construct_product | WBCnstr00036736 | ||||||||
Microarray_results | 186927_s_at | ||||||||
A_12_P112729 | |||||||||
A_12_P118120 | |||||||||
A_12_P145430 | |||||||||
GPL13394_WBGene00001725 | |||||||||
GPL13914_Y65B4BR.6 | |||||||||
GPL14144_Y65B4BR.6b_1099-1158_0.649_61_B | |||||||||
GPL14144_Y65B4BR.6b_1315-1374_0.833_18_A | |||||||||
GPL14144_Y65B4BR.6b_996-1055_0.658_58_C | |||||||||
GPL19516_CGZ0052005 | |||||||||
GPL19516_CGZ0052006 | |||||||||
GPL21109_Y65B4BR.6a | |||||||||
GPL21109_Y65B4BR.6b | |||||||||
GPL3518_CE25541 | |||||||||
GPL8304_CE_WBGene00001725_A | |||||||||
GPL8673_Y65B4BR_6aP00002 | |||||||||
GPL8673_Y65B4BR_6aP00559 | |||||||||
GPL8673_Y65B4BR_6aP00949 | |||||||||
GPL8673_Y65B4BR_6bP00668 | |||||||||
GPL8673_Y65B4BR_6bP00681 | |||||||||
GPL8673_Y65B4BR_6bP00773 | |||||||||
GPL9450_Y65B4BR.6 | |||||||||
cea2.c.07850 | |||||||||
Expression_cluster (308) | |||||||||
Interaction | WBInteraction000543998 | ||||||||
Map_info | Map | I | Position | -18.9281 | Error | 0.004756 | |||
Positive | Positive_clone | Y65B4BR | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00028754 | ||||||||
WBPaper00031588 | |||||||||
WBPaper00050709 | |||||||||
WBPaper00062388 | |||||||||
WBPaper00064105 | |||||||||
Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |