WormBase Tree Display for Gene: WBGene00021671
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WBGene00021671 | SMap | S_parent | Sequence | Y48G1BM | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | Sequence_name | Y48G1BM.6 | |||||||
Molecular_name | Y48G1BM.6a | ||||||||
Y48G1BM.6a.1 | |||||||||
CE54310 | |||||||||
Y48G1BM.6d | |||||||||
Other_name | CELE_Y48G1BM.6 | Accession_evidence | NDB | BX284601 | |||||
Public_name | Y48G1BM.6 | ||||||||
DB_info | Database (7) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 09 Jan 2009 16:50:33 | WBPerson1849 | Event | Acquires_merge | WBGene00021670 | ||||
3 | 10 Nov 2020 23:53:02 | WBPerson51134 | Event | Split_into | WBGene00306121 | ||||
Acquires_merge | WBGene00021670 | ||||||||
Split_into | WBGene00306121 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (67) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00157740 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||
WBGene00154700 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00153849 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
CSP21.g5461 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP31.g20487 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP31.g25463 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP31.g4464 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP38.g18049 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
Pan_g7224 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Paralog (20) | |||||||||
Structured_description | Automated_description | Enriched in hermaphrodite gonad; neurons; retrovesicular ganglion; and vulval cell based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including nuo-6; mut-16; and mut-2 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including multi-walled carbon nanotube; Alovudine; and metformin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info (5) | |||||||||
Experimental_info | RNAi_result | WBRNAi00055472 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056947 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056946 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058283 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019988 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1013491 | ||||||||
Expr1039488 | |||||||||
Expr1160392 | |||||||||
Expr2007682 | |||||||||
Expr2025924 | |||||||||
Microarray_results | 176182_s_at | ||||||||
187373_s_at | |||||||||
A_12_P116747 | |||||||||
A_12_P176576 | |||||||||
GPL13394_WBGene00021671 | |||||||||
GPL13914_Y48G1BM.6 | |||||||||
GPL14144_Y48G1BM.6_1688-1747_0.714_333_A | |||||||||
GPL19516_CGZ0047239 | |||||||||
GPL21109_Y48G1BM.6 | |||||||||
GPL8673_Y48G1BM_6P00702 | |||||||||
GPL8673_Y48G1BM_6P01041 | |||||||||
GPL8673_Y48G1BM_6P01734 | |||||||||
GPL8673_Y54G2A_21P01476 | |||||||||
GPL8673_Y54G2A_21P01523 | |||||||||
cea2.3.27268 | |||||||||
cea2.3.28897 | |||||||||
Expression_cluster (154) | |||||||||
Interaction | WBInteraction000373465 | ||||||||
WBInteraction000373467 | |||||||||
WBInteraction000373469 | |||||||||
Map_info | Positive | Positive_clone | Y48G1BM | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | I | -19.1182 | |||||||
Remark | [2020-11-10T23:53:02.969Z WBPerson51134] Gene Split creating Y48G1BM.10 WBGene00306121: Seems to be a fusion of CDS Y48G1BM.6 and CDS Y48G1BM.10 | Curator_confirmed | WBPerson51134 | ||||||
[2020-11-10T23:54:39.038Z WBPerson51134] Gene Updated: Biotype changed to CDS | Curator_confirmed | WBPerson51134 | |||||||
Method | Gene |