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WormBase Tree Display for Gene: WBGene00021070

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Name Class

WBGene00021070SMapS_parentSequenceW07B8
IdentityVersion2
NameCGC_namecpr-8
Sequence_nameW07B8.1
Molecular_nameW07B8.1a
W07B8.1a.1
CE14674
W07B8.1b
Other_namedrd-3Paper_evidenceWBPaper00044557
Person_evidenceWBPerson10050
CELE_W07B8.1Accession_evidenceNDBBX284605
Public_namecpr-8
DB_infoDatabaseAceViewgene5B617
WormQTLgeneWBGene00021070
WormFluxgeneWBGene00021070
NDBlocus_tagCELE_W07B8.1
PanthergeneCAEEL|WormBase=WBGene00021070|UniProtKB=O16289
familyPTHR12411
NCBIgene178613
RefSeqproteinNM_070983.7
NR_132498.1
TrEMBLUniProtAccO16289
UniProt_GCRPUniProtAccO16289
RNAcentralURSidURS0000843C85
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
229 Apr 2015 12:07:40WBPerson2970Name_changeCGC_namecpr-8
Other_namedrd-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpr
Allele (84)
StrainWBStrain00032862
RNASeq_FPKM (74)
GO_annotation00027684
00027685
00027686
00125538
00125539
OrthologWBGene00024382Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00061103Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00153747Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00124450Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00194597Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00221212Brugia malayiFrom_analysisWormBase-Compara
WBGene00221927Brugia malayiFrom_analysisWormBase-Compara
WBGene00227936Brugia malayiFrom_analysisWormBase-Compara
WBGene00227937Brugia malayiFrom_analysisWormBase-Compara
WBGene00227938Brugia malayiFrom_analysisWormBase-Compara
WBGene00227940Brugia malayiFrom_analysisWormBase-Compara
WBGene00227942Brugia malayiFrom_analysisWormBase-Compara
CSP21.g5564Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7218Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5844Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8720Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15112Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13971Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15233Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3054Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2028Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00279.g8372Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00279.g8385Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-cpr-8Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold513.g2587Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01877.g23665Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12679Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_020863Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g10438Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g1472Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g2142Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g9180Panagrellus redivivusFrom_analysisWormBase-Compara
chrV_pilon.g13181Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238914Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00273832Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00255952Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288835Trichuris murisFrom_analysisWormBase-Compara
WBGene00288836Trichuris murisFrom_analysisWormBase-Compara
HGNC:2527Homo sapiensFrom_analysisOrthoFinder
OrthoInspector
Panther
Paralog (28)
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease of the nervous system (multiple); carcinoma (multiple); and type 2 diabetes mellitus. Is an ortholog of human CTSB (cathepsin B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:9351Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:11054Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:2671Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:9352Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:2377Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:10941Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:12842Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:3068Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:4914Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
DOID:1612Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2527)
Molecular_infoCorresponding_CDSW07B8.1a
Corresponding_transcriptW07B8.1b
W07B8.1a.1
Associated_featureWBsf999258
WBsf999259
WBsf1019135
WBsf1019136
WBsf231385
Experimental_infoRNAi_resultWBRNAi00115176Inferred_automaticallyRNAi_primary
WBRNAi00089178Inferred_automaticallyRNAi_primary
WBRNAi00076746Inferred_automaticallyRNAi_primary
WBRNAi00019692Inferred_automaticallyRNAi_primary
WBRNAi00036358Inferred_automaticallyRNAi_primary
WBRNAi00054940Inferred_automaticallyRNAi_primary
Expr_patternExpr1014103
Expr1158475
Expr2010508
Expr2028748
Microarray_resultsSMD_W07B8.1
189227_at
A_12_P100655
Aff_W07B8.1
GPL13394_WBGene00021070
GPL13914_W07B8.1
GPL14144_W07B8.1_579-638_0.939_4_C
GPL14144_W07B8.1_796-855_0.946_2_B
GPL14144_W07B8.1_959-1018_0.947_1_A
GPL19516_CGZ0038707
GPL21109_W07B8.1
GPL3518_CE14674
GPL8304_CE_WBGene00021070_A
GPL8304_CE_WBGene00021070_B
GPL8673_W07B8_1P00223
GPL8673_W07B8_1P00295
GPL8673_W07B8_1P00564
GPL9450_W07B8.1
cea2.p.127151
Expression_cluster (221)
InteractionWBInteraction000108869
WBInteraction000227593
WBInteraction000292392
WBInteraction000382485
WBInteraction000455274
WBInteraction000459558
WBInteraction000503272
Map_infoMapVPosition-19.8519
PositivePositive_cloneW07B8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00044557
WBPaper00055090
WBPaper00059755
WBPaper00061178
WBPaper00064130
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene