WormBase Tree Display for Gene: WBGene00020128

WBGene00020128 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 2
    Name: Sequence_name: R193.2
      Molecular_name: R193.2
        R193.2.1
        CE48098
      Other_name: CELE_R193.2 Accession_evidence: NDB BX284606
      Public_name: R193.2
    DB_info: Database: AceView gene XB752
        WormQTL gene WBGene00020128
        WormFlux gene WBGene00020128
        NDB locus_tag CELE_R193.2
        Panther gene CAEEL|WormBase=WBGene00020128|UniProtKB=Q9N5F6
          family PTHR22588
        NCBI gene 182256
        RefSeq protein NM_075817.5
        TrEMBL UniProtAcc Q9N5F6
        UniProt_GCRP UniProtAcc Q9N5F6
        OMIM gene 120250
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 23 Jul 2004 11:11:23 WBPerson1849 Event: Acquires_merge: WBGene00015475
      Acquires_merge: WBGene00015475
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (147)
    RNASeq_FPKM (74)
    GO_annotation: 00095396
    Ortholog: WBGene00026872 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00190208 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00128587 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00060160 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00107112 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g2746 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g16069 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13389 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20765 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6112 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g6063 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18772 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11188 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00001.g35 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-R193.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold514.g2613 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00339.g9701 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_01236.g19477 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03137 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_022274 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11319 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0010500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18390 Caenorhabditis elegans From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-070501-8 Danio rerio From_analysis: OrthoFinder
            PhylomeDB
            SonicParanoid
      HGNC:2213 Homo sapiens From_analysis: OrthoFinder
            PhylomeDB
      MGI:88461 Mus musculus From_analysis: OrthoFinder
            PhylomeDB
    Structured_description: Automated_description: Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Bethlem myopathy; Ullrich congenital muscular dystrophy; and dystonia 27. Is an ortholog of human COL6A3 (collagen type VI alpha 3 chain). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (17)
  Molecular_info: Corresponding_CDS: R193.2
    Corresponding_CDS_history: R193.2:wp128
      R193.2:wp171
      R193.2:wp236
    Corresponding_transcript: R193.2.1
    Other_sequence: CBC03966_1
    Associated_feature: WBsf653687
      WBsf1003955
      WBsf1003956
      WBsf1003957
      WBsf1003958
      WBsf1022221
      WBsf237006
  Experimental_info: RNAi_result: WBRNAi00017897 Inferred_automatically: RNAi_primary
      WBRNAi00052019 Inferred_automatically: RNAi_primary
      WBRNAi00009082 Inferred_automatically: RNAi_primary
      WBRNAi00039766 Inferred_automatically: RNAi_primary
      WBRNAi00010218 Inferred_automatically: RNAi_primary
      WBRNAi00028507 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023854
      Expr1038754
      Expr1155659
      Expr2005674
      Expr2023890
    Drives_construct: WBCnstr00025356
    Construct_product: WBCnstr00025356
    Microarray_results: SMD_C05D9.8
      SMD_R193.C
      SMD_R193.D
      178464_at
      184144_at
      A_12_P104213
      A_12_P116980
      A_12_P139930
      A_12_P139931
      Aff_C05D9.8
      GPL13394_WBGene00020128
      GPL13914_R193.2
      GPL14144_R193.2_1212-1271_0.800_96_C
      GPL14144_R193.2_321-380_0.808_81_B
      GPL14144_R193.2_3322-3381_0.808_78_A
      GPL19516_CGZ0012227
      GPL19516_CGZ0032387
      GPL21109_Cat_R193.2
      GPL21109_R193.2
      GPL3518_CE23520
      GPL3518_CE23929
      GPL8304_CE_WBGene00020128_A
      GPL8673_R193_2P04384
      GPL8673_R193_2P04636
      GPL8673_R193_2P05408
      GPL9450_R193.2
      cea2.p.152273
    Expression_cluster (290)
    Interaction: WBInteraction000551540
  Map_info: Positive: Positive_clone: R193 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -18.485
  Reference: WBPaper00026952
    WBPaper00061938
  Method: Gene