WormBase Tree Display for Gene: WBGene00017319

WBGene00017319 SMap: S_parent: Sequence: F09G8
  Identity: Version: 2
    Name: CGC_name: mrps-9 Person_evidence: WBPerson261
            WBPerson555
      Sequence_name: F09G8.3
      Molecular_name: F09G8.3
        F09G8.3.1
        CE24890
      Other_name: CELE_F09G8.3 Accession_evidence: NDB BX284603
      Public_name: mrps-9
    DB_info: Database: AceView gene 3J357
        WormQTL gene WBGene00017319
        WormFlux gene WBGene00017319
        NDB locus_tag CELE_F09G8.3
        Panther gene CAEEL|WormBase=WBGene00017319|UniProtKB=P34388
          family PTHR21569
        NCBI gene 184267
        RefSeq protein NM_066414.6
        SwissProt UniProtAcc P34388
        TREEFAM TREEFAM_ID TF106154
        UniProt_GCRP UniProtAcc P34388
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrps-9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrps
    Allele (22)
    Strain: WBStrain00037563
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00036533 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00054750 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00155476 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00121499 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00228045 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4165 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13654 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21813 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16472 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP31.g5121 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g18005 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1458 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15047 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22127 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8238 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00253.g7948 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_III.g10375 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_III.g10382 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold561.g3899 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00188.g6601 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19687 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009791 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04947 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g543 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30233300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8350 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00212874 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00245320 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304878 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261067 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292339 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000350 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      FB:FBgn0037529 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-060825-257 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14501 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1916777 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306558 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00004485 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is an ortholog of human MRPS9 (mitochondrial ribosomal protein S9). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F09G8.3
    Corresponding_transcript: F09G8.3.1
    Other_sequence (40)
    Associated_feature: WBsf645401
      WBsf993280
      WBsf1015379
      WBsf225382
      WBsf225383
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr1020939
      Expr1037447
      Expr1148144
      Expr2013759
      Expr2031994
    Drives_construct: WBCnstr00027392
    Construct_product: WBCnstr00027392
    Microarray_results: SMD_F09G8.3
      176095_at
      A_12_P102631
      Aff_F09G8.3
      GPL13394_WBGene00017319
      GPL13914_F09G8.3
      GPL14144_F09G8.3_1049-1108_0.913_7_C
      GPL14144_F09G8.3_1116-1175_0.972_1_A
      GPL14144_F09G8.3_926-985_0.943_4_B
      GPL19516_CGZ0015237
      GPL21109_F09G8.3
      GPL3518_CE24890
      GPL8304_CE_WBGene00017319_A
      GPL8304_CE_WBGene00017319_B
      GPL8673_F09G8_3P00033
      GPL8673_F09G8_3P00753
      GPL8673_F09G8_3P00986
      GPL9450_F09G8.3
      cea2.p.61199
    Expression_cluster (119)
    SAGE_tag (12)
    Interaction (106)
  Map_info: Map: III Position: -0.351761 Error: 0.000137
    Positive: Positive_clone: F09G8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00033751
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene