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WormBase Tree Display for Gene: WBGene00014222

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Name Class

WBGene00014222SMapS_parentSequenceZK1098
IdentityVersion2
NameCGC_nametrpp-3Person_evidenceWBPerson3188
Sequence_nameZK1098.5
Molecular_nameZK1098.5
ZK1098.5.1
CE00368
Other_nameCELE_ZK1098.5Accession_evidenceNDBBX284603
Public_nametrpp-3
DB_infoDatabaseAceViewgene3K615
WormQTLgeneWBGene00014222
WormFluxgeneWBGene00014222
NDBlocus_tagCELE_ZK1098.5
PanthergeneCAEEL|WormBase=WBGene00014222|UniProtKB=P34605
familyPTHR13048
NCBIgene176344
RefSeqproteinNM_066699.7
SwissProtUniProtAccP34605
TREEFAMTREEFAM_IDTF300091
UniProt_GCRPUniProtAccP34605
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
208 Aug 2013 16:41:57WBPerson2970Name_changeCGC_nametrpp-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtrpp
Allele (21)
StrainWBStrain00051448
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP3596
OrthologWBGene00055080Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00031543Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00153213Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00212342Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00234311Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4949Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16288Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13220Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g15203Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14082Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3255Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25787Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11115Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12912Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g12939Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3383Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-trpp-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18375Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00327.g9479Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07392Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009451Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g5968Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30194000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8638Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245501Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00261062Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285550Trichuris murisFrom_analysisWormBase-Compara
WBGene00297132Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001776Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0260859Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040801-120Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:19942Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:21090Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:1351486Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:3642034Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1309135Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:2318506Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
Structured_descriptionAutomated_descriptionInvolved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle and protein secretion. Predicted to be located in cis-Golgi network membrane and cytosol. Predicted to be part of TRAPP complex. Is an ortholog of human TRAPPC3 (trafficking protein particle complex subunit 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK1098.5
Corresponding_transcriptZK1098.5.1
Other_sequence (34)
Associated_featureWBsf659416
WBsf225587
Experimental_infoRNAi_resultWBRNAi00059113Inferred_automaticallyRNAi_primary
WBRNAi00059112Inferred_automaticallyRNAi_primary
WBRNAi00059111Inferred_automaticallyRNAi_primary
WBRNAi00082858Inferred_automaticallyRNAi_primary
WBRNAi00085570Inferred_automaticallyRNAi_primary
WBRNAi00038148Inferred_automaticallyRNAi_primary
WBRNAi00002785Inferred_automaticallyRNAi_primary
WBRNAi00002662Inferred_automaticallyRNAi_primary
WBRNAi00061602Inferred_automaticallyRNAi_primary
WBRNAi00021807Inferred_automaticallyRNAi_primary
Expr_patternExpr1024760
Expr1036375
Expr1162538
Expr2017510
Expr2035649
Drives_constructWBCnstr00029214
Construct_productWBCnstr00029214
Microarray_resultsSMD_ZK1098.5
187448_at
A_12_P112022
Aff_ZK1098.5
GPL13394_WBGene00014222
GPL13914_ZK1098.5
GPL14144_ZK1098.5_403-462_0.940_4_B
GPL14144_ZK1098.5_483-542_0.960_1_A
GPL14144_ZK1098.5_49-108_0.931_7_C
GPL19516_CGZ0056238
GPL21109_ZK1098.5
GPL3518_CE00368
GPL8304_CE_WBGene00014222_A
GPL8304_CE_WBGene00014222_B
GPL8304_CE_WBGene00014222_C
GPL8673_ZK1098_5P00190
GPL8673_ZK1098_5P00221
GPL8673_ZK1098_5P00279
GPL9450_ZK1098.5
cea2.c.25599
Expression_cluster (84)
Interaction (111)
Map_infoMapIIIPosition0.577842
PositivePositive_cloneZK1098Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005423
WBPaper00005747
WBPaper00027766
WBPaper00038491
WBPaper00055090
WBPaper00060970
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene