WormBase Tree Display for Gene: WBGene00013577

WBGene00013577 SMap: S_parent: Sequence: Y76A2B
  Identity: Version: 2
    Name: CGC_name: mmad-1 Person_evidence: WBPerson19575
      Sequence_name: Y76A2B.5
      Molecular_name: Y76A2B.5
        Y76A2B.5.1
        CE19277
      Other_name: CELE_Y76A2B.5 Accession_evidence: NDB BX284603
      Public_name: mmad-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Oct 2023 01:37:05 WBPerson51134 Name_change: CGC_name: mmad-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mmad
    Allele (33)
    RNASeq_FPKM (74)
    GO_annotation: 00103335
      00120392
    Contained_in_operon: CEOP3812
    Ortholog: WBGene00061529 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00035616 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163904 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124068 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g4481 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4053 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13982 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13752 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g3568 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20905 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2180 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6374 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12766 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g29425 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5181 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19045 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00041.g2247 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y76A2B.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18528 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03419.g30128 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04027 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11708 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20296 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30037200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00284261 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259522 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287946 Trichuris muris From_analysis: WormBase-Compara
      WBGene00294606 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0030101 Drosophila melanogaster From_analysis: OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0260758 Drosophila melanogaster From_analysis: OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040704-50 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040718-152 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:25221 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1923786 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1303272 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be involved in cobalamin metabolic process. Predicted to be located in mitochondrion. Expressed in body wall musculature. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblD. Is an ortholog of human MMADHC (metabolism of cobalamin associated D). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050716 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:25221)
  Molecular_info: Corresponding_CDS: Y76A2B.5
    Corresponding_transcript: Y76A2B.5.1
    Other_sequence (57)
    Associated_feature: WBsf651582
      WBsf718016
      WBsf227765
      WBsf227766
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr416
      Expr1015100
      Expr1036069
      Expr1161902
      Expr2008429
      Expr2026671
    Microarray_results: SMD_Y76A2B.5
      181278_s_at
      A_12_P104337
      Aff_Y76A2B.5
      GPL13394_WBGene00013577
      GPL13914_Y76A2B.5
      GPL14144_Y76A2B.5_432-491_0.849_34_C
      GPL14144_Y76A2B.5_520-579_0.920_6_B
      GPL14144_Y76A2B.5_653-712_0.943_1_A
      GPL19516_CGZ0054827
      GPL19516_CGZ0054828
      GPL21109_Y76A2B.5.1
      GPL3518_CE19277
      GPL8304_CE_WBGene00013577_A
      GPL8304_CE_WBGene00013577_C
      GPL8673_Y76A2B_5P00137
      GPL8673_Y76A2B_5P00445
      GPL8673_Y76A2B_5P00614
      GPL9450_Y76A2B.5
      cea2.c.24775
    Expression_cluster (103)
    Interaction (37)
  Map_info: Positive: Positive_clone: Y76A2B Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 21.2623
  Reference: WBPaper00005736
    WBPaper00024763
    WBPaper00038491
    WBPaper00055090
  Method: Gene