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WormBase Tree Display for Gene: WBGene00010230

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Name Class

WBGene00010230SMapS_parentSequenceF58A4
IdentityVersion2
NameCGC_namerpac-19Person_evidenceWBPerson10054
Sequence_nameF58A4.9
Molecular_nameF58A4.9
F58A4.9.1
CE00225
Other_nameCELE_F58A4.9Accession_evidenceNDBBX284603
Public_namerpac-19
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
228 Sep 2012 14:29:00WBPerson2970Name_changeCGC_namerpac-19
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpac
AlleleWBVar01500260
WBVar00405717
WBVar01499774
WBVar01723199
WBVar01332159
WBVar00092985
WBVar00851574
WBVar00851575
WBVar01645909
StrainWBStrain00036516
RNASeq_FPKM (74)
GO_annotation (11)
Contained_in_operonCEOP3608
OrthologWBGene00031520Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00055060Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155439Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00125161Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00224800Brugia malayiFrom_analysisWormBase-Compara
CSP21.g8003Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16491Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14054Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3234Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g5167Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12883Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7241Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g8520Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_00614.g12783Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rpac-19Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18347Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00091.g3995Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_009476Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14148Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12690Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30196300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8669Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238964Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00260760Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000005057Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0086447Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040930-4Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:20422Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:108403Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00012187Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein dimerization activity. Predicted to contribute to RNA polymerase I activity and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I and transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex and RNA polymerase III complex. Used to study obesity. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 2. Is an ortholog of human POLR1D (RNA polymerase I and III subunit D).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:9970Homo sapiensPaper_evidenceWBPaper00061889
Curator_confirmedWBPerson324
Date_last_updated28 Jun 2022 00:00:00
Potential_modelDOID:0080790Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:20422)
Models_disease_in_annotationWBDOannot00001261
Molecular_infoCorresponding_CDSF58A4.9
Corresponding_transcriptF58A4.9.1
Other_sequence (27)
Associated_featureWBsf651391
WBsf993736
Experimental_infoRNAi_result (26)
Expr_patternExpr1014907
Expr1034461
Expr1152674
Expr2015417
Expr2033652
Drives_constructWBCnstr00031569
Construct_productWBCnstr00031569
Microarray_resultsSMD_F58A4.9
192261_s_at
A_12_P106946
Aff_F58A4.9
GPL13394_WBGene00010230
GPL13914_F58A4.9
GPL14144_F58A4.9_162-221_0.941_3_B
GPL14144_F58A4.9_290-349_0.956_1_A
GPL14144_F58A4.9_320-379_0.915_11_C
GPL19516_CGZ0025130
GPL19516_CGZ0025131
GPL21109_F58A4.9.1
GPL3518_CE00225
GPL8304_CE_WBGene00010230_A
GPL8673_F58A4_9P00152
GPL8673_F58A4_9P00160
GPL8673_F58A4_9P00312
GPL9450_F58A4.9
cea2.c.20400
Expression_cluster (134)
Interaction (186)
Map_infoMapIIIPosition0.819375
PositivePositive_cloneF58A4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00061889
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene