WormBase Tree Display for Gene: WBGene00009783

WBGene00009783 SMap: S_parent: Sequence: F46C5
  Identity: Version: 2
    Name: CGC_name: rer-1 Person_evidence: WBPerson3858
      Sequence_name: F46C5.8
      Molecular_name: F46C5.8
        F46C5.8.1
        CE03349
      Other_name: CELE_F46C5.8 Accession_evidence: NDB BX284602
      Public_name: rer-1
    DB_info: Database: AceView gene 2J103
        WormQTL gene WBGene00009783
        WormFlux gene WBGene00009783
        NDB locus_tag CELE_F46C5.8
        Panther gene CAEEL|WormBase=WBGene00009783|UniProtKB=P52879
          family PTHR10743
        NCBI gene 174410
        RefSeq protein NM_001381540.2
        SwissProt UniProtAcc P52879
        TREEFAM TREEFAM_ID TF300029
        UniProt_GCRP UniProtAcc P52879
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 15 Mar 2007 17:00:31 WBPerson2970 Name_change: CGC_name: rer-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rer
    Allele (31)
    Strain: WBStrain00003665
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00026094 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053296 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119873 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00194010 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00105582 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00234150 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6616 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g290 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21650 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17075 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20233 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16913 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9402 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19487 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3406 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22397 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g3432 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g8213 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00367.g9842 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rer-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20683 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00010.g697 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09315 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005604 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02542 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21529 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20310000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5348 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247045 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259421 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00267522 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293320 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000507 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0039303 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1494 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:30309 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1915080 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306324 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Involved in IRE1-mediated unfolded protein response. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of human RER1 (retention in endoplasmic reticulum sorting receptor 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F46C5.8
    Corresponding_transcript: F46C5.8.1
    Other_sequence (51)
    Associated_feature: WBsf644507
      WBsf221816
      WBsf221817
      WBsf221818
      WBsf221819
      WBsf221820
  Experimental_info: RNAi_result: WBRNAi00015079 Inferred_automatically: RNAi_primary
      WBRNAi00047512 Inferred_automatically: RNAi_primary
      WBRNAi00117193 Inferred_automatically: RNAi_primary
      WBRNAi00032357 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram700
      Chronogram1027
      Expr6087
      Expr6088
      Expr13597
      Expr1018655
      Expr1034277
      Expr1151351
      Expr2015300
      Expr2033534
    Drives_construct: WBCnstr00004063
      WBCnstr00004102
      WBCnstr00031924
    Construct_product: WBCnstr00008681
      WBCnstr00008688
      WBCnstr00021445
      WBCnstr00031924
    Antibody: WBAntibody00002662
    Microarray_results: SMD_F46C5.8
      192220_at
      A_12_P102467
      A_12_P155815
      A_12_P155816
      Aff_F46C5.8
      GPL13394_WBGene00009783
      GPL13914_F46C5.8
      GPL14144_F46C5.8_208-267_0.933_3_B
      GPL14144_F46C5.8_299-358_0.914_6_C
      GPL14144_F46C5.8_523-582_0.958_1_A
      GPL19516_CGZ0022078
      GPL19516_CGZ0022079
      GPL21109_F46C5.8.1
      GPL3518_CE03349
      GPL8304_CE_WBGene00009783_A
      GPL8304_CE_WBGene00009783_B
      GPL8304_CE_WBGene00009783_C
      GPL8673_F46C5_8P00083
      GPL8673_F46C5_8P00341
      GPL8673_F46C5_8P00490
      GPL9450_F46C5.8
      cea2.c.12491
    Expression_cluster (107)
    Interaction (37)
  Map_info: Map: II Position: 0.901758 Error: 0.000789
    Positive: Positive_clone: F46C5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00043011
    WBPaper00047615
    WBPaper00055090
    WBPaper00062289
    WBPaper00064057
    WBPaper00064375
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene