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WormBase Tree Display for Gene: WBGene00007400

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Name Class

WBGene00007400SMapS_parentSequenceC07A9
IdentityVersion2
NameCGC_namebud-31
Sequence_nameC07A9.2
Molecular_nameC07A9.2
C07A9.2.1
CE00499
C07A9.2.2
Other_name3J784Accession_evidenceEMBLAF303257
CELE_C07A9.2Accession_evidenceNDBBX284603
Public_namebud-31
DB_infoDatabaseAceViewgene3K784
WormQTLgeneWBGene00007400
WormFluxgeneWBGene00007400
NDBlocus_tagCELE_C07A9.2
PanthergeneCAEEL|WormBase=WBGene00007400|UniProtKB=P34313
familyPTHR19411
NCBIgene176368
RefSeqproteinNM_001379868.1
SwissProtUniProtAccP34313
TREEFAMTREEFAM_IDTF105609
UniProt_GCRPUniProtAccP34313
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
205 Apr 2017 11:17:23WBPerson2970Name_changeCGC_namebud-31
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbud
Allele (27)
StrainWBStrain00051144
RNASeq_FPKM (74)
GO_annotation00041550
00041551
00041552
00041553
00041554
00041555
00041556
00115537
Contained_in_operonCEOP3612
OrthologWBGene00055045Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00031505Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00151178Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00095976Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00129106Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00234318Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5260Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13297Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8162Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14037Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3219Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21290Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12867Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7253Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1469Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3422Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00957.g15118Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-C07A9.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9351Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02867.g28187Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_009492Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14822Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23473Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30198220Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8683Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244492Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00257859Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290845Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000659Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0001491Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040720-3Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:29629Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2141291Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:621103Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is an ortholog of human BUD31 (BUD31 homolog).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC07A9.2
Corresponding_transcriptC07A9.2.1
C07A9.2.2
Other_sequence (74)
Associated_featureWBsf651395
WBsf651396
WBsf667314
WBsf667315
WBsf667316
WBsf993765
WBsf993766
WBsf1015654
WBsf1015655
WBsf227352
Experimental_infoRNAi_result (24)
Expr_patternExpr1015684
Expr1033185
Expr1144053
Expr2009682
Expr2027921
Drives_constructWBCnstr00033770
Construct_productWBCnstr00033770
Microarray_resultsSMD_C07A9.2
173809_s_at
A_12_P113580
A_12_P157300
A_12_P157301
A_12_P157302
A_12_P157303
Aff_C07A9.2
GPL13394_WBGene00007400
GPL13914_C07A9.2
GPL14144_C07A9.2_249-308_0.919_15_C
GPL14144_C07A9.2_297-356_0.944_3_B
GPL14144_C07A9.2_381-440_0.971_1_A
GPL19516_CGZ0003155
GPL19516_CGZ0003156
GPL21109_C07A9.2.1
GPL3518_CE00499
GPL8304_CE_WBGene00007400_A
GPL8673_C07A9_2P00038
GPL8673_C07A9_2P00231
GPL8673_C07A9_2P00318
GPL9450_C07A9.2
cea2.c.17055
Expression_cluster (135)
Interaction (102)
Map_infoMapIIIPosition0.890235
PositivePositive_cloneC07A9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00045396
WBPaper00048493
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene