WormBase Tree Display for Gene: WBGene00004496

WBGene00004496 SMap: S_parent: Sequence: F56E10
  Identity: Version: 1
    Name: CGC_name: rps-27
      Sequence_name: F56E10.4
      Molecular_name: F56E10.4
        F56E10.4.1
        CE19904
        F56E10.4.2
      Other_name: CELE_F56E10.4 Accession_evidence: NDB BX284605
      Public_name: rps-27
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (16)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps27 using blastP
    Strain (1214)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00062161 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028716 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00106409 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00143102 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125381 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00099059 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00152817 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00234172 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1024 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1444 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5777 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21979 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10558 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16411 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9795 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14774 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6033 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20871 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00129.g5144 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rps-27 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21458 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_05431 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_019139 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11823 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20902 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50005000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g12933 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248730 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260620 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00284929 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001639 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000001063 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0039300 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1735 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050522-549 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-060331-65 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10416 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:18476 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1888676 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1915191 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3704345 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621045 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1565070 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      RGD:1595396 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2323707 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rps-27 encodes a small ribosomal subunit S27 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 17. Is an ortholog of human RPS27 (ribosomal protein S27). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111880 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10416)
  Molecular_info: Corresponding_CDS: F56E10.4
    Corresponding_transcript: F56E10.4.1
      F56E10.4.2
    Other_sequence (293)
    Associated_feature (13)
  Experimental_info: RNAi_result (18)
    Expr_pattern: Chronogram577
      Expr6224
      Expr1012200
      Expr1032299
      Expr1152482
      Expr2015522
      Expr2033757
    Drives_construct (12)
    Microarray_results: SMD_F56E10.4
      173246_s_at
      A_12_P108354
      Aff_F56E10.4
      GPL13394_WBGene00004496
      GPL13914_F56E10.4
      GPL14144_F56E10.4_176-235_0.598_23_C
      GPL14144_F56E10.4_196-255_0.896_9_B
      GPL14144_F56E10.4_50-109_0.940_1_A
      GPL19516_CGZ0024668
      GPL19516_CGZ0024669
      GPL21109_F56E10.4.1
      GPL3518_CE19904
      GPL8304_CE_WBGene00004496_A
      GPL8673_F56E10_4P00016
      GPL8673_F56E10_4P00158
      GPL8673_F56E10_4P00185
      GPL9450_F56E10.4
      cea2.c.36668
    Expression_cluster (178)
    Interaction (157)
  Map_info: Map: V Position: -20.0126 Error: 0.000534
    Positive: Positive_clone: F56E10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene