WormBase Tree Display for Gene: WBGene00004451

WBGene00004451 SMap: S_parent: Sequence: C54C6
  Identity: Version: 1
    Name: CGC_name: rpl-37
      Sequence_name: C54C6.1
      Molecular_name: C54C6.1
        C54C6.1.1
        CE05493
      Other_name: CELE_C54C6.1 Accession_evidence: NDB BX284603
      Public_name: rpl-37
    DB_info: Database: AceView gene 3E619
        WormQTL gene WBGene00004451
        WormFlux gene WBGene00004451
        NDB locus_tag CELE_C54C6.1
        Panther gene CAEEL|WormBase=WBGene00004451|UniProtKB=P49622
          family PTHR10768
        NCBI gene 175460
        RefSeq protein NM_065326.6
        SwissProt UniProtAcc P49622
        TREEFAM TREEFAM_ID TF300260
        UniProt_GCRP UniProtAcc P49622
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele: WBVar01500082
      WBVar02150311
      WBVar01578820
      WBVar01578821
      WBVar01498832
      WBVar01837365
      WBVar01479547
    Legacy_information: [C.elegansII] NMK. Transspliced to SL1; encodes predicted ribosomal protein L37 (54% identical to rat). [Bektesh et al. 1988; DH]
      Orthologous to yeast (S.cerevisiae) ribosomal protein rpl37 using blastP
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00026956 Caenorhabditis briggsae From_analysis: OMA
            WormBase-Compara
      WBGene00062199 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00136613 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00140553 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00163192 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00234335 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7186 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13587 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16827 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8069 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20024 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27349 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4945 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21458 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4503 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23632 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00121.g4941 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g5045 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18328 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_10950 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004624 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08763 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20159300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6618 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247822 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261654 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00284987 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002908 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0030616 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:10347 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1914531 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:3651519 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:621204 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1560186 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:2321317 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00012179 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: rpl-37 encodes a large ribosomal subunit L37 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL37 (ribosomal protein L37). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C54C6.1
    Corresponding_transcript: C54C6.1.1
    Other_sequence (119)
    Associated_feature: WBsf224622
  Experimental_info: RNAi_result (22)
    Expr_pattern: Expr1018871
      Expr1032255
      Expr1147078
      Expr2015470
      Expr2033705
    Drives_construct: WBCnstr00035475
    Construct_product: WBCnstr00035475
    Microarray_results: SMD_C54C6.1
      193079_s_at
      A_12_P118680
      A_12_P138680
      Aff_C54C6.1
      GPL14144_C54C6.1_217-276_0.967_1_A
      GPL19516_CGZ0010455
      GPL19516_CGZ0010456
      GPL21109_C54C6.1.1
      GPL3518_CE05493
      GPL9450_C54C6.1
      cea2.d.17777
    Expression_cluster (104)
    Interaction (139)
  Map_info: Map: III Position: -5.94768
    Positive: Positive_clone: C54C6 Inferred_automatically: From sequence, transcript, pseudogene data
        DH#SL005
    Pseudo_map_position
  Reference: WBPaper00004403
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene