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WormBase Tree Display for Gene: WBGene00002272

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Name Class

WBGene00002272SMapS_parentSequenceC16H3
IdentityVersion1
NameCGC_namelec-9
Sequence_nameC16H3.2
Molecular_nameC16H3.2
C16H3.2.1
CE08236
Other_nameCELE_C16H3.2Accession_evidenceNDBBX284606
Public_namelec-9
DB_infoDatabaseAceViewgeneXS215
WormQTLgeneWBGene00002272
WormFluxgeneWBGene00002272
NDBlocus_tagCELE_C16H3.2
PanthergeneCAEEL|WormBase=WBGene00002272|UniProtKB=G5EC10
familyPTHR11346
NCBIgene181786
RefSeqproteinNM_078443.9
TrEMBLUniProtAccG5EC10
UniProt_GCRPUniProtAccG5EC10
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:27WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlec
Allele (18)
Legacy_information[Arata Y] No mutants known. Encodes predicted galectin. Predicted gene C16H3.2
RNASeq_FPKM (74)
GO_annotation00010709
00010710
00010711
00010712
00010713
00110344
OrthologWBGene00063201Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025051Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00163953Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129464Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00207210Caenorhabditis japonicaFrom_analysisTreeFam
CBOVI.g2348Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g2349Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13905Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g936Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16064Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6077Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19193Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17053Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g473Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26436Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20083Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00055.g2837Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lec-9Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13590Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00554.g12802Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01481Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023439Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g12483Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g16202Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19805Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19809Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19819Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19820Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19822Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g7043Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g7045Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0030000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g21054Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00274509Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279252Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00290216Trichuris murisFrom_analysisWormBase-Compara
WBGene00293012Trichuris murisFrom_analysisWormBase-Compara
WBGene00301846Trichuris murisFrom_analysisWormBase-Compara
RGD:3004Rattus norvegicusFrom_analysisOMA
Panther
Paralog (26)
Structured_descriptionConcise_descriptionlec-9 encodes a predicted lectin that affects embryonic viability.Paper_evidenceWBPaper00004651
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables glycolipid binding activity. Located in cytoplasm.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC16H3.2
Corresponding_transcriptC16H3.2.1
Other_sequence (12)
Associated_featureWBsf648884
WBsf655156
WBsf663750
WBsf663751
WBsf718848
WBsf1008966
Experimental_infoRNAi_resultWBRNAi00028981Inferred_automaticallyRNAi_primary
WBRNAi00010876Inferred_automaticallyRNAi_primary
WBRNAi00001288Inferred_automaticallyRNAi_primary
WBRNAi00040748Inferred_automaticallyRNAi_primary
Expr_patternExpr1011910
Expr1031339
Expr1144789
Expr2013042
Expr2031274
Drives_constructWBCnstr00036341
Construct_productWBCnstr00036341
Microarray_resultsSMD_C16H3.2
192336_at
A_12_P116856
Aff_C16H3.2
GPL13394_WBGene00002272
GPL13914_C16H3.2
GPL14144_C16H3.2_143-202_0.934_2_B
GPL14144_C16H3.2_336-395_0.942_1_A
GPL14144_C16H3.2_51-110_0.903_4_C
GPL19516_CGZ0004991
GPL21109_C16H3.2
GPL3518_CE08236
GPL8304_CE_WBGene00002272_A
GPL8304_CE_WBGene00002272_B
GPL8304_CE_WBGene00002272_C
GPL8673_C16H3_2P00015
GPL8673_C16H3_2P00245
GPL8673_C16H3_2P00318
GPL9450_C16H3.2
cea2.c.41608
Expression_cluster (254)
Interaction (29)
Map_infoMapXPosition24.5266Error0.040461
PositivePositive_cloneC16H3Person_evidenceWBPerson763
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004651
WBPaper00006465
WBPaper00032075
WBPaper00034766
WBPaper00037859
WBPaper00038491
WBPaper00039111
WBPaper00055090
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene