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WormBase Tree Display for Gene: WBGene00000729

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Name Class

WBGene00000729EvidencePerson_evidenceWBPerson345
WBPerson651
SMapS_parentSequenceF57B7
IdentityVersion1
NameCGC_namecol-156Person_evidenceWBPerson345
Sequence_nameF57B7.3
Molecular_nameF57B7.3
F57B7.3.1
CE05991
Other_nameCELE_F57B7.3Accession_evidenceNDBBX284605
Public_namecol-156
DB_infoDatabaseAceViewgene5L930
WormQTLgeneWBGene00000729
WormFluxgeneWBGene00000729
NDBlocus_tagCELE_F57B7.3
PanthergeneCAEEL|WormBase=WBGene00000729|UniProtKB=Q20927
familyPTHR24637
NCBIgene186439
RefSeqproteinNM_073501.8
TREEFAMTREEFAM_IDTF316783
TrEMBLUniProtAccQ20927
UniProt_GCRPUniProtAccQ20927
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (28)
StrainWBStrain00050975
RNASeq_FPKM (74)
GO_annotation00069580
00069581
00107717
OrthologWBGene00100342Pristionchus pacificusFrom_analysisOMA
WBGene00107748Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00105778Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00064748Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00041602Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00154093Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00123373Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00094278Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00107697Pristionchus pacificusFrom_analysisOMA
WBGene00233145Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g851Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5323Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g6831Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11097Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15489Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10319Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g9217Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7123Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19301Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17380Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29196Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14487Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00421.g10636Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-col-156Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12677Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03968.g31731Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16740Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14411Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14417Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_50323300Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50323500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15776Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246166Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00090321Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00090372Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092283Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00092285Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105663Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00205753Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00271999Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00272184Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274166Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278433Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279747Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281490Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281529Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262350Strongyloides rattiFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-030131-3430Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
ZFIN:ZDB-GENE-110411-119Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
Paralog (170)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF57B7.3
Corresponding_transcriptF57B7.3.1
Other_sequence (107)
Associated_featureWBsf1001355
WBsf234535
Experimental_infoRNAi_resultWBRNAi00015875Inferred_automaticallyRNAi_primary
WBRNAi00033016Inferred_automaticallyRNAi_primary
WBRNAi00048829Inferred_automaticallyRNAi_primary
Expr_patternExpr1027365
Expr1030443
Expr1152584
Expr2010351
Expr2028594
Drives_constructWBCnstr00037329
Construct_productWBCnstr00037329
Microarray_resultsSMD_F57B7.3
SMD_F57B7.3:2
188312_at
A_12_P115610
Aff_F57B7.3
GPL13394_WBGene00000729
GPL13914_F57B7.3
GPL14144_F57B7.3_149-208_0.914_3_B
GPL14144_F57B7.3_227-286_0.893_8_C
GPL14144_F57B7.3_535-594_0.927_1_A
GPL19516_CGZ0024912
GPL21109_F57B7.3
GPL3518_CE05991
GPL8304_CE_WBGene00000729_A
GPL8673_F57B7_3P00001
GPL8673_F57B7_3P00077
GPL8673_F57B7_3P00145
GPL9450_F57B7.3
cea2.i.40086
Expression_cluster (235)
Interaction (163)
Map_infoMapVPosition3.11339Error0.002807
PositivePositive_cloneF57B7Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00065859
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene