WormBase Tree Display for Gene: WBGene00019606

WBGene00019606 SMap: S_parent: Sequence: K10B2
  Identity: Version: 2
    Name: CGC_name: clec-88
      Sequence_name: K10B2.3
      Molecular_name: K10B2.3a
        K10B2.3a.1
        CE33419
        K10B2.3b
        CE33420
        K10B2.3b.1
      Other_name: cpg-6 Paper_evidence: WBPaper00027679
        CELE_K10B2.3 Accession_evidence: NDB BX284602
      Public_name: clec-88
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 15 Jun 2006 11:58:01 WBPerson2970 Name_change: CGC_name: clec-88
                Other_name: cpg-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (24)
    Strain: WBStrain00050927
    RNASeq_FPKM (74)
    GO_annotation: 00083496
      00083497
      00083498
      00083499
      00083500
      00083501
    Contained_in_operon: CEOP2248
    Ortholog (43)
    Paralog (23)
    Structured_description: Concise_description: clec-88 encodes, by alternative splicing, two isoforms of a putativelysecreted C-type lectin paralogous to CLEC-87, C25B8.4, F26D10.12, andZK858.3; CLEC-88 has a single chondroitin attachment site verified bymass spectrometry; CLEC-88 has no obvious function in mass RNAi assays. Paper_evidence: WBPaper00027679
          Curator_confirmed: WBPerson567
          Date_last_updated: 02 May 2007 00:00:00
      Automated_description: Predicted to enable carbohydrate binding activity. Predicted to be located in external side of plasma membrane. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Is an ortholog of human KLRF2 (killer cell lectin like receptor F2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:684 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:13342)
  Molecular_info: Corresponding_CDS: K10B2.3a
      K10B2.3b
    Corresponding_CDS_history: K10B2.3:wp94
    Corresponding_transcript: K10B2.3a.1
      K10B2.3b.1
    Other_sequence: Tcir_isotig17094
      FK802813.1
      Hbac_isotig02808
    Associated_feature: WBsf644275
      WBsf976444
      WBsf976445
      WBsf976446
      WBsf221425
      WBsf221426
      WBsf221427
  Experimental_info: RNAi_result: WBRNAi00050473 Inferred_automatically: RNAi_primary
      WBRNAi00034227 Inferred_automatically: RNAi_primary
      WBRNAi00050472 Inferred_automatically: RNAi_primary
      WBRNAi00022399 Inferred_automatically: RNAi_primary
      WBRNAi00062314 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022185
      Expr1038465
      Expr1154183
      Expr2010219
      Expr2028460
    Drives_construct: WBCnstr00025734
    Construct_product: WBCnstr00025734
    Microarray_results (26)
    Expression_cluster (220)
    Interaction: WBInteraction000100280
      WBInteraction000103083
      WBInteraction000103844
      WBInteraction000109513
      WBInteraction000109605
      WBInteraction000110039
      WBInteraction000111851
      WBInteraction000112479
      WBInteraction000113925
      WBInteraction000113973
      WBInteraction000113976
      WBInteraction000113979
      WBInteraction000113982
      WBInteraction000113984
      WBInteraction000114027
      WBInteraction000114029
      WBInteraction000114031
      WBInteraction000114033
      WBInteraction000114102
      WBInteraction000114104
      WBInteraction000114105
      WBInteraction000114106
      WBInteraction000114107
      WBInteraction000114108
      WBInteraction000114109
      WBInteraction000114110
      WBInteraction000114111
      WBInteraction000114112
      WBInteraction000114113
      WBInteraction000114114
      WBInteraction000114115
      WBInteraction000114116
      WBInteraction000114117
      WBInteraction000114118
      WBInteraction000114119
      WBInteraction000114120
      WBInteraction000114121
      WBInteraction000114122
      WBInteraction000114123
      WBInteraction000114124
      WBInteraction000114125
      WBInteraction000114126
      WBInteraction000114127
      WBInteraction000114128
      WBInteraction000114129
      WBInteraction000114130
      WBInteraction000114131
      WBInteraction000114132
      WBInteraction000114133
      WBInteraction000114134
      WBInteraction000114135
      WBInteraction000114136
      WBInteraction000114137
      WBInteraction000114138
      WBInteraction000114724
      WBInteraction000114726
      WBInteraction000117545
      WBInteraction000122026
      WBInteraction000123066
      WBInteraction000123071
      WBInteraction000123105
      WBInteraction000123191
      WBInteraction000123520
      WBInteraction000123869
      WBInteraction000127505
      WBInteraction000133520
      WBInteraction000133832
      WBInteraction000133948
      WBInteraction000134238
      WBInteraction000136163
      WBInteraction000136736
      WBInteraction000137903
      WBInteraction000147407
      WBInteraction000148400
      WBInteraction000148843
      WBInteraction000150674
      WBInteraction000151392
      WBInteraction000153055
      WBInteraction000156819
      WBInteraction000157984
      WBInteraction000158371
      WBInteraction000159470
      WBInteraction000159471
      WBInteraction000159472
      WBInteraction000159473
      WBInteraction000159721
      WBInteraction000163641
      WBInteraction000165398
      WBInteraction000168031
      WBInteraction000168256
      WBInteraction000170095
      WBInteraction000171505
      WBInteraction000172397
      WBInteraction000176034
      WBInteraction000176233
      WBInteraction000178208
      WBInteraction000181679
      WBInteraction000183370
      WBInteraction000189811
      WBInteraction000190656
      WBInteraction000192187
      WBInteraction000193834
      WBInteraction000195002
      WBInteraction000195245
      WBInteraction000198059
      WBInteraction000198312
      WBInteraction000198465
      WBInteraction000199338
      WBInteraction000201161
      WBInteraction000201377
      WBInteraction000201977
      WBInteraction000202570
      WBInteraction000208343
      WBInteraction000209584
      WBInteraction000210725
      WBInteraction000212201
      WBInteraction000214930
      WBInteraction000215607
      WBInteraction000216747
      WBInteraction000217055
      WBInteraction000219261
      WBInteraction000219390
      WBInteraction000219464
      WBInteraction000220005
      WBInteraction000220524
      WBInteraction000223640
      WBInteraction000224309
      WBInteraction000226369
      WBInteraction000229391
      WBInteraction000231410
      WBInteraction000231776
      WBInteraction000232050
      WBInteraction000232235
      WBInteraction000233289
      WBInteraction000234236
      WBInteraction000234614
      WBInteraction000235399
      WBInteraction000235469
      WBInteraction000238243
      WBInteraction000241265
      WBInteraction000242252
      WBInteraction000242362
      WBInteraction000242532
      WBInteraction000245393
      WBInteraction000245408
      WBInteraction000247138
      WBInteraction000249623
      WBInteraction000254741
      WBInteraction000255388
      WBInteraction000256509
      WBInteraction000258634
      WBInteraction000266521
      WBInteraction000269305
      WBInteraction000270738
      WBInteraction000271954
      WBInteraction000272378
      WBInteraction000272670
      WBInteraction000274820
      WBInteraction000275324
      WBInteraction000275706
      WBInteraction000277154
      WBInteraction000278310
      WBInteraction000280066
      WBInteraction000280522
      WBInteraction000282763
      WBInteraction000282889
      WBInteraction000284714
      WBInteraction000285684
      WBInteraction000294050
      WBInteraction000294475
      WBInteraction000295478
      WBInteraction000295845
      WBInteraction000296938
      WBInteraction000296999
      WBInteraction000297052
      WBInteraction000298623
      WBInteraction000298642
      WBInteraction000300310
      WBInteraction000300609
      WBInteraction000300764
      WBInteraction000304501
      WBInteraction000306720
      WBInteraction000306880
      WBInteraction000310896
      WBInteraction000312151
      WBInteraction000312281
      WBInteraction000312882
      WBInteraction000313254
      WBInteraction000313814
      WBInteraction000313866
      WBInteraction000314396
      WBInteraction000315438
      WBInteraction000315548
      WBInteraction000315834
      WBInteraction000316193
      WBInteraction000318514
      WBInteraction000319228
      WBInteraction000323661
      WBInteraction000325423
      WBInteraction000325924
      WBInteraction000327547
      WBInteraction000330499
      WBInteraction000335190
      WBInteraction000335444
      WBInteraction000336459
      WBInteraction000339504
      WBInteraction000341478
      WBInteraction000342536
      WBInteraction000345167
      WBInteraction000345608
      WBInteraction000346085
      WBInteraction000346387
      WBInteraction000348099
      WBInteraction000348383
      WBInteraction000349597
      WBInteraction000352761
      WBInteraction000355837
      WBInteraction000356170
      WBInteraction000356868
      WBInteraction000358647
      WBInteraction000359306
      WBInteraction000360467
      WBInteraction000361734
      WBInteraction000363987
      WBInteraction000367175
      WBInteraction000368660
      WBInteraction000370006
      WBInteraction000374200
      WBInteraction000375990
      WBInteraction000377269
      WBInteraction000378959
      WBInteraction000380774
      WBInteraction000381712
      WBInteraction000382148
      WBInteraction000383413
      WBInteraction000385465
      WBInteraction000385502
      WBInteraction000388283
      WBInteraction000388777
      WBInteraction000391685
      WBInteraction000391717
      WBInteraction000394085
      WBInteraction000397156
      WBInteraction000398554
      WBInteraction000400804
      WBInteraction000401732
      WBInteraction000402740
      WBInteraction000403939
      WBInteraction000404688
      WBInteraction000405818
      WBInteraction000411717
      WBInteraction000411893
      WBInteraction000412386
      WBInteraction000417621
      WBInteraction000420729
      WBInteraction000421635
      WBInteraction000428173
      WBInteraction000430594
      WBInteraction000430892
      WBInteraction000431107
      WBInteraction000436428
      WBInteraction000442412
      WBInteraction000442573
      WBInteraction000444101
      WBInteraction000445472
      WBInteraction000445644
      WBInteraction000445963
      WBInteraction000447798
      WBInteraction000452143
      WBInteraction000452896
      WBInteraction000454312
      WBInteraction000456518
      WBInteraction000456749
      WBInteraction000457413
      WBInteraction000459291
      WBInteraction000460182
      WBInteraction000461913
      WBInteraction000503743
      WBInteraction000578125
      WBInteraction000582666
  Map_info: Map: II Position: -0.378744 Error: 0.000717
    Positive: Positive_clone: K10B2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027679
    WBPaper00038491
    WBPaper00055090
    WBPaper00065859
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene