WormBase Tree Display for Gene: WBGene00019299

WBGene00019299 SMap: S_parent: Sequence: K02D7
  Identity: Version: 2
    Name: CGC_name: snai-1 Person_evidence: WBPerson2634
            WBPerson2601
      Sequence_name: K02D7.2
      Molecular_name: K02D7.2
        K02D7.2.1
        CE30286
      Other_name: snai-2 Person_evidence: WBPerson2634
            WBPerson2601
        CELE_K02D7.2 Accession_evidence: NDB BX284604
      Public_name: snai-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:01 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 09 Jan 2015 16:33:20 WBPerson2970 Name_change: CGC_name: snai-1
                Other_name: snai-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snai
    Allele (42)
    RNASeq_FPKM (74)
    GO_annotation: 00033880
      00033881
      00033882
      00033883
    Ortholog (30)
    Paralog (21)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in PHAL; PHAR; PHBL; PHBR; and amphid neurons. Human ortholog(s) of this gene implicated in colorectal cancer; oral mucosa leukoplakia; and piebaldism. Is an ortholog of human SNAI1 (snail family transcriptional repressor 1) and SNAI2 (snail family transcriptional repressor 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9256 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11128)
      DOID:3263 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11094)
      DOID:9655 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11128)
  Molecular_info: Corresponding_CDS: K02D7.2
    Corresponding_transcript: K02D7.2.1
    Other_sequence: HBC08348_1
      Oden_isotig28302
      Oden_isotig15721
      Dviv_isotig19526
      FM207829.1
      Oden_isotig15720
      EE724182.1
      Dviv_isotig19527
    Associated_feature: WBsf667700
      WBsf667701
      WBsf718025
      WBsf978761
      WBsf995118
      WBsf1016533
      WBsf229670
    Transcription_factor: WBTranscriptionFactor000831
  Experimental_info: RNAi_result: WBRNAi00070186 Inferred_automatically: RNAi_primary
      WBRNAi00049696 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11287
      Expr1021512
      Expr1153417
      Expr2015936
      Expr2034169
    Drives_construct: WBCnstr00018737
      WBCnstr00025934
    Construct_product: WBCnstr00025934
      WBCnstr00038832
    Microarray_results (18)
    Expression_cluster (50)
    Interaction: WBInteraction000032540
      WBInteraction000032541
      WBInteraction000034326
      WBInteraction000035171
      WBInteraction000035172
      WBInteraction000041815
      WBInteraction000041819
      WBInteraction000043162
      WBInteraction000043561
      WBInteraction000043753
      WBInteraction000044821
      WBInteraction000044824
      WBInteraction000044825
      WBInteraction000044834
      WBInteraction000044842
      WBInteraction000045144
      WBInteraction000045145
      WBInteraction000045146
      WBInteraction000045479
      WBInteraction000045816
      WBInteraction000046111
      WBInteraction000046365
      WBInteraction000046786
      WBInteraction000047037
      WBInteraction000047048
      WBInteraction000049744
      WBInteraction000175276
      WBInteraction000180708
      WBInteraction000188853
      WBInteraction000200588
      WBInteraction000213642
      WBInteraction000219190
      WBInteraction000220580
      WBInteraction000228090
      WBInteraction000235950
      WBInteraction000248587
      WBInteraction000261455
      WBInteraction000287610
      WBInteraction000304608
      WBInteraction000314157
      WBInteraction000333990
      WBInteraction000334175
      WBInteraction000338640
      WBInteraction000342502
      WBInteraction000360654
      WBInteraction000362090
      WBInteraction000366646
      WBInteraction000396099
      WBInteraction000439853
      WBInteraction000440178
      WBInteraction000448205
      WBInteraction000455287
      WBInteraction000472170
      WBInteraction000526390
      WBInteraction000528431
      WBInteraction000583591
  Map_info: Map: IV Position: -26.6522
    Positive: Positive_clone: K02D7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00033118
    WBPaper00038491
    WBPaper00046606
    WBPaper00055090
    WBPaper00061738
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene