WormBase Tree Display for Gene: WBGene00018239
expand all nodes | collapse all nodes | view schema
| WBGene00018239 | SMap | S_parent | Sequence | F40G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sec-20 | Person_evidence | WBPerson3132 | |||||
| Sequence_name | F40G9.1 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | CELE_F40G9.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | sec-20 | ||||||||
| DB_info | Database | AceView | gene | 3A811 | |||||
| WormQTL | gene | WBGene00018239 | |||||||
| WormFlux | gene | WBGene00018239 | |||||||
| NDB | locus_tag | CELE_F40G9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018239|UniProtKB=C0Z1Y7 | |||||||
| family | PTHR12825 | ||||||||
| NCBI | gene | 175187 | |||||||
| RefSeq | protein | NM_064775.5 | |||||||
| TREEFAM | TREEFAM_ID | TF324339 | |||||||
| TrEMBL | UniProtAcc | C0Z1Y7 | |||||||
| UniProt_GCRP | UniProtAcc | C0Z1Y7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Mar 2010 11:10:22 | WBPerson2970 | Name_change | CGC_name | sec-20 | ||||
| Split_into | WBGene00185078 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sec | ||||||||
| Allele (74) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3016 | ||||||||
| Ortholog (26) | |||||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in Down syndrome. Is an ortholog of human BNIP1 (BCL2 interacting protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:14250 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1082) | ||||
| Molecular_info | Corresponding_CDS | F40G9.1 | |||||||
| Corresponding_CDS_history | F40G9.1:wp201 | ||||||||
| Corresponding_transcript | F40G9.1.1 | ||||||||
| Other_sequence | Dviv_isotig10838 | ||||||||
| Associated_feature | WBsf644907 | ||||||||
| WBsf224348 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1015175 | ||||||||
| Expr1037855 | |||||||||
| Expr1150770 | |||||||||
| Expr2015711 | |||||||||
| Expr2033943 | |||||||||
| Microarray_results | SMD_F40G9.1 | ||||||||
| GPL14144_F40G9.1_440-499_0.928_3_C | |||||||||
| GPL14144_F40G9.1_502-561_0.914_8_B | |||||||||
| GPL14144_F40G9.1_631-690_0.939_1_A | |||||||||
| GPL19516_CGZ0020886 | |||||||||
| GPL21109_F40G9.1 | |||||||||
| GPL8673_F40G9_1P00456 | |||||||||
| Expression_cluster (50) | |||||||||
| Interaction | WBInteraction000037823 | ||||||||
| WBInteraction000045229 | |||||||||
| WBInteraction000047803 | |||||||||
| WBInteraction000107035 | |||||||||
| WBInteraction000109339 | |||||||||
| WBInteraction000109749 | |||||||||
| WBInteraction000111442 | |||||||||
| WBInteraction000111456 | |||||||||
| WBInteraction000111467 | |||||||||
| WBInteraction000111478 | |||||||||
| WBInteraction000111487 | |||||||||
| WBInteraction000111507 | |||||||||
| WBInteraction000111526 | |||||||||
| WBInteraction000111536 | |||||||||
| WBInteraction000111554 | |||||||||
| WBInteraction000111567 | |||||||||
| WBInteraction000111576 | |||||||||
| WBInteraction000111614 | |||||||||
| WBInteraction000111637 | |||||||||
| WBInteraction000111656 | |||||||||
| WBInteraction000111750 | |||||||||
| WBInteraction000111751 | |||||||||
| WBInteraction000111752 | |||||||||
| WBInteraction000111753 | |||||||||
| WBInteraction000111754 | |||||||||
| WBInteraction000111755 | |||||||||
| WBInteraction000111756 | |||||||||
| WBInteraction000111757 | |||||||||
| WBInteraction000111758 | |||||||||
| WBInteraction000111759 | |||||||||
| WBInteraction000111760 | |||||||||
| WBInteraction000111761 | |||||||||
| WBInteraction000111762 | |||||||||
| WBInteraction000111763 | |||||||||
| WBInteraction000111764 | |||||||||
| WBInteraction000111765 | |||||||||
| WBInteraction000146072 | |||||||||
| WBInteraction000156238 | |||||||||
| WBInteraction000156239 | |||||||||
| WBInteraction000156240 | |||||||||
| WBInteraction000156241 | |||||||||
| WBInteraction000162983 | |||||||||
| WBInteraction000361364 | |||||||||
| WBInteraction000364289 | |||||||||
| WBInteraction000365559 | |||||||||
| WBInteraction000379524 | |||||||||
| WBInteraction000386839 | |||||||||
| WBInteraction000402041 | |||||||||
| WBInteraction000403419 | |||||||||
| WBInteraction000406101 | |||||||||
| Map_info | Map | III | Position | -26.918 | Error | 0.001579 | |||
| Positive | Positive_clone | F40G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
