WormBase Tree Display for Gene: WBGene00015477
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| WBGene00015477 | SMap | S_parent | Sequence | C05D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | attf-4 | Person_evidence | WBPerson260 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | C05D10.1 | ||||||||
| Molecular_name | C05D10.1a | ||||||||
| C05D10.1a.1 | |||||||||
| CE24783 | |||||||||
| C05D10.1b | |||||||||
| CE01124 | |||||||||
| C05D10.1c | |||||||||
| CE37698 | |||||||||
| C05D10.1b.1 | |||||||||
| C05D10.1c.1 | |||||||||
| Other_name | CELE_C05D10.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | attf-4 | ||||||||
| DB_info | Database | AceView | gene | 3H173 | |||||
| WormQTL | gene | WBGene00015477 | |||||||
| WormFlux | gene | WBGene00015477 | |||||||
| NDB | locus_tag | CELE_C05D10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015477|UniProtKB=Q11178 | |||||||
| family | PTHR36522 | ||||||||
| NCBI | gene | 175858 | |||||||
| RefSeq | protein | NM_001379742.1 | |||||||
| NM_171147.7 | |||||||||
| NM_001379741.2 | |||||||||
| SwissProt | UniProtAcc | Q11178 | |||||||
| TREEFAM | TREEFAM_ID | TF321832 | |||||||
| UniProt_GCRP | UniProtAcc | Q11178 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Sep 2011 11:35:55 | WBPerson2970 | Name_change | CGC_name | attf-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | attf | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00031990 | ||||||||
| WBStrain00030081 | |||||||||
| WBStrain00030082 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00057328 | ||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity. Expressed in head muscle; hypodermis; pharyngeal-intestinal valve; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D10.1a | |||||||
| C05D10.1b | |||||||||
| C05D10.1c | |||||||||
| Corresponding_CDS_history | C05D10.1b:wp275 | ||||||||
| Corresponding_transcript | C05D10.1a.1 | ||||||||
| C05D10.1b.1 | |||||||||
| C05D10.1c.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (14) | |||||||||
| Gene_product_binds (151) | |||||||||
| Transcription_factor | WBTranscriptionFactor000952 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00039719 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010192 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028487 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005561 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00014261 | ||||||||
| WBCnstr00014264 | |||||||||
| WBCnstr00015188 | |||||||||
| WBCnstr00028816 | |||||||||
| Construct_product | WBCnstr00016574 | ||||||||
| WBCnstr00016714 | |||||||||
| WBCnstr00028816 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction | WBInteraction000194747 | ||||||||
| WBInteraction000268517 | |||||||||
| WBInteraction000288215 | |||||||||
| WBInteraction000297583 | |||||||||
| WBInteraction000319609 | |||||||||
| WBInteraction000320919 | |||||||||
| WBInteraction000386823 | |||||||||
| WBInteraction000410036 | |||||||||
| WBInteraction000410376 | |||||||||
| WBInteraction000446364 | |||||||||
| WBInteraction000448368 | |||||||||
| WBInteraction000523514 | |||||||||
| WBInteraction000525487 | |||||||||
| WBInteraction000525488 | |||||||||
| WBInteraction000525489 | |||||||||
| WBInteraction000525490 | |||||||||
| WBInteraction000525491 | |||||||||
| WBInteraction000525790 | |||||||||
| WBInteraction000525949 | |||||||||
| WBInteraction000526001 | |||||||||
| WBInteraction000526174 | |||||||||
| WBInteraction000527058 | |||||||||
| WBInteraction000527754 | |||||||||
| WBInteraction000527829 | |||||||||
| WBInteraction000527907 | |||||||||
| WBInteraction000544118 | |||||||||
| WBInteraction000547100 | |||||||||
| WBInteraction000558426 | |||||||||
| Map_info | Map | III | Position | -1.42234 | Error | 0.000479 | |||
| Positive | Positive_clone | C05D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
