WormBase Tree Display for Gene: WBGene00013758
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| WBGene00013758 | SMap | S_parent | Sequence | Y113G7B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-114 | Person_evidence | WBPerson655 | |||||
| Sequence_name | Y113G7B.7 | ||||||||
| Molecular_name | Y113G7B.7 | ||||||||
| Y113G7B.7.1 | |||||||||
| CE23289 | |||||||||
| Other_name | CELE_Y113G7B.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | fbxa-114 | ||||||||
| DB_info | Database (10) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-114 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (108) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP5504 | ||||||||
| Ortholog (17) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in germ line; germline precursor cell; head mesodermal cell; intestine; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including glp-1; eat-2; and elt-2 based on microarray and RNA-seq studies. Is affected by ten chemicals including manganese chloride; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y113G7B.7 | |||||||
| Corresponding_transcript | Y113G7B.7.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00055409 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019900 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081082 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036594 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062417 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024237 | ||||||||
| Expr1158924 | |||||||||
| Expr2011460 | |||||||||
| Expr2029698 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction | WBInteraction000109571 | ||||||||
| WBInteraction000156550 | |||||||||
| WBInteraction000163913 | |||||||||
| WBInteraction000167913 | |||||||||
| WBInteraction000197907 | |||||||||
| WBInteraction000203233 | |||||||||
| WBInteraction000203976 | |||||||||
| WBInteraction000222039 | |||||||||
| WBInteraction000224627 | |||||||||
| WBInteraction000278123 | |||||||||
| WBInteraction000285149 | |||||||||
| WBInteraction000304772 | |||||||||
| WBInteraction000325835 | |||||||||
| WBInteraction000333683 | |||||||||
| WBInteraction000345898 | |||||||||
| WBInteraction000349066 | |||||||||
| WBInteraction000363839 | |||||||||
| WBInteraction000375189 | |||||||||
| WBInteraction000379676 | |||||||||
| WBInteraction000380148 | |||||||||
| WBInteraction000382534 | |||||||||
| WBInteraction000403715 | |||||||||
| WBInteraction000406592 | |||||||||
| WBInteraction000413986 | |||||||||
| WBInteraction000426181 | |||||||||
| WBInteraction000430883 | |||||||||
| WBInteraction000431168 | |||||||||
| WBInteraction000437553 | |||||||||
| WBInteraction000440116 | |||||||||
| WBInteraction000445065 | |||||||||
| WBInteraction000447072 | |||||||||
| WBInteraction000452751 | |||||||||
| WBInteraction000461300 | |||||||||
| Map_info | Map | V | Position | 24.9294 | Error | 0.003417 | |||
| Positive | Positive_clone | Y113G7B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00034662 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
