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WormBase Tree Display for Gene: WBGene00010478

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Name Class

WBGene00010478SMapS_parentSequenceK01G5
IdentityVersion2
NameCGC_namedkc-1Person_evidenceWBPerson260
Sequence_nameK01G5.5
Molecular_nameK01G5.5
K01G5.5.1
CE16195
Other_nameCELE_K01G5.5Accession_evidenceNDBBX284603
Public_namedkc-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
202 Mar 2022 23:57:00WBPerson51134Name_changeCGC_namedkc-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdkc
Allele (34)
StrainWBStrain00037243
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP3842
Ortholog (36)
Structured_descriptionConcise_descriptionThe K01G5.5 gene encodes an ortholog of human DYSKERIN (DKC1; OMIM:300126), which when mutated leads to X-linked dyskeratosis congenita (OMIM:305000); the K01G5.5 protein is predicted to be mitochondrial with 68% accuracy.Paper_evidenceWBPaper00004103
WBPaper00004424
Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable pseudouridine synthase activity. Predicted to be involved in box H/ACA RNA 3'-end processing and pseudouridine synthesis. Predicted to be located in nucleolus. Predicted to be part of box H/ACA snoRNP complex. Human ortholog(s) of this gene implicated in X-linked dyskeratosis congenita and aplastic anemia. Is an ortholog of human DKC1 (dyskerin pseudouridine synthase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:2729Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2890)
DOID:12449Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2890)
DOID:0070025Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2890)
Molecular_info (4)
Experimental_infoRNAi_resultWBRNAi00016410Inferred_automaticallyRNAi_primary
WBRNAi00049635Inferred_automaticallyRNAi_primary
WBRNAi00002578Inferred_automaticallyRNAi_primary
WBRNAi00033832Inferred_automaticallyRNAi_primary
WBRNAi00001600Inferred_automaticallyRNAi_primary
WBRNAi00007830Inferred_automaticallyRNAi_primary
Expr_patternExpr1027254
Expr1034573
Expr1153363
Expr2004655
Expr2022883
Drives_constructWBCnstr00031390
Construct_productWBCnstr00031390
Microarray_results (19)
Expression_cluster (163)
InteractionWBInteraction000009877
WBInteraction000034096
WBInteraction000034581
WBInteraction000035400
WBInteraction000036466
WBInteraction000036970
WBInteraction000036975
WBInteraction000037038
WBInteraction000037225
WBInteraction000037341
WBInteraction000037608
WBInteraction000037616
WBInteraction000037755
WBInteraction000038896
WBInteraction000039250
WBInteraction000039667
WBInteraction000040244
WBInteraction000040366
WBInteraction000040824
WBInteraction000041516
WBInteraction000042679
WBInteraction000043682
WBInteraction000044170
WBInteraction000045818
WBInteraction000045819
WBInteraction000046072
WBInteraction000046081
WBInteraction000046125
WBInteraction000046532
WBInteraction000046572
WBInteraction000046790
WBInteraction000046867
WBInteraction000046896
WBInteraction000047572
WBInteraction000048392
WBInteraction000048393
WBInteraction000048545
WBInteraction000048560
WBInteraction000048629
WBInteraction000048637
WBInteraction000048638
WBInteraction000048639
WBInteraction000048640
WBInteraction000049241
WBInteraction000049242
WBInteraction000049680
WBInteraction000049991
WBInteraction000050526
WBInteraction000050527
WBInteraction000102746
WBInteraction000103277
WBInteraction000104079
WBInteraction000104492
WBInteraction000104841
WBInteraction000107098
WBInteraction000108802
WBInteraction000109036
WBInteraction000109207
WBInteraction000109514
WBInteraction000109932
WBInteraction000112185
WBInteraction000112825
WBInteraction000113210
WBInteraction000113392
WBInteraction000114572
WBInteraction000115091
WBInteraction000119741
WBInteraction000120804
WBInteraction000121656
WBInteraction000124852
WBInteraction000125291
WBInteraction000133548
WBInteraction000133732
WBInteraction000135949
WBInteraction000137474
WBInteraction000137533
WBInteraction000138183
WBInteraction000138963
WBInteraction000140990
WBInteraction000141203
WBInteraction000144122
WBInteraction000145249
WBInteraction000145693
WBInteraction000146990
WBInteraction000148803
WBInteraction000149096
WBInteraction000149400
WBInteraction000150513
WBInteraction000151277
WBInteraction000151944
WBInteraction000152787
WBInteraction000152993
WBInteraction000153112
WBInteraction000160045
WBInteraction000160324
WBInteraction000163061
WBInteraction000163224
WBInteraction000163703
WBInteraction000164038
WBInteraction000164086
WBInteraction000168149
WBInteraction000168302
WBInteraction000170138
WBInteraction000170540
WBInteraction000170928
WBInteraction000171254
WBInteraction000171458
WBInteraction000172486
WBInteraction000174273
WBInteraction000175197
WBInteraction000175492
WBInteraction000176393
WBInteraction000176602
WBInteraction000177197
WBInteraction000177626
WBInteraction000178738
WBInteraction000179313
WBInteraction000180127
WBInteraction000181520
WBInteraction000182668
WBInteraction000184426
WBInteraction000185119
WBInteraction000185245
WBInteraction000185658
WBInteraction000186412
WBInteraction000187137
WBInteraction000187515
WBInteraction000188748
WBInteraction000189563
WBInteraction000189564
WBInteraction000191718
WBInteraction000193285
WBInteraction000193664
WBInteraction000194555
WBInteraction000194685
WBInteraction000195252
WBInteraction000195502
WBInteraction000196187
WBInteraction000200892
WBInteraction000201455
WBInteraction000202759
WBInteraction000203196
WBInteraction000203439
WBInteraction000204369
WBInteraction000204956
WBInteraction000205255
WBInteraction000206980
WBInteraction000207553
WBInteraction000208871
WBInteraction000208873
WBInteraction000209887
WBInteraction000214420
WBInteraction000215809
WBInteraction000217112
WBInteraction000217815
WBInteraction000219516
WBInteraction000220197
WBInteraction000221666
WBInteraction000229271
WBInteraction000230364
WBInteraction000230535
WBInteraction000231091
WBInteraction000231175
WBInteraction000232682
WBInteraction000233610
WBInteraction000233998
WBInteraction000234301
WBInteraction000234515
WBInteraction000235994
WBInteraction000237082
WBInteraction000239918
WBInteraction000242596
WBInteraction000242637
WBInteraction000244224
WBInteraction000245551
WBInteraction000246797
WBInteraction000247203
WBInteraction000248720
WBInteraction000249626
WBInteraction000251229
WBInteraction000251245
WBInteraction000252241
WBInteraction000254268
WBInteraction000256619
WBInteraction000258533
WBInteraction000260096
WBInteraction000264024
WBInteraction000264563
WBInteraction000268351
WBInteraction000270711
WBInteraction000275205
WBInteraction000279056
WBInteraction000281158
WBInteraction000281502
WBInteraction000282699
WBInteraction000283634
WBInteraction000284712
WBInteraction000286595
WBInteraction000287262
WBInteraction000288280
WBInteraction000288610
WBInteraction000289401
WBInteraction000291542
WBInteraction000291857
WBInteraction000293929
WBInteraction000293956
WBInteraction000295937
WBInteraction000299170
WBInteraction000300362
WBInteraction000305505
WBInteraction000306189
WBInteraction000314186
WBInteraction000316539
WBInteraction000317361
WBInteraction000318168
WBInteraction000318191
WBInteraction000320034
WBInteraction000320144
WBInteraction000322419
WBInteraction000325346
WBInteraction000326175
WBInteraction000328927
WBInteraction000330415
WBInteraction000331588
WBInteraction000333770
WBInteraction000334267
WBInteraction000335325
WBInteraction000335326
WBInteraction000337622
WBInteraction000338096
WBInteraction000338468
WBInteraction000339267
WBInteraction000343045
WBInteraction000343453
WBInteraction000343454
WBInteraction000344653
WBInteraction000345773
WBInteraction000346081
WBInteraction000346690
WBInteraction000347477
WBInteraction000350036
WBInteraction000351260
WBInteraction000353910
WBInteraction000355301
WBInteraction000355409
WBInteraction000356911
WBInteraction000360008
WBInteraction000360237
WBInteraction000360841
WBInteraction000362887
WBInteraction000363063
WBInteraction000363980
WBInteraction000368821
WBInteraction000369819
WBInteraction000369933
WBInteraction000372233
WBInteraction000375930
WBInteraction000379868
WBInteraction000380398
WBInteraction000380797
WBInteraction000380955
WBInteraction000381787
WBInteraction000383644
WBInteraction000384839
WBInteraction000384956
WBInteraction000384974
WBInteraction000385280
WBInteraction000388754
WBInteraction000390876
WBInteraction000391366
WBInteraction000393783
WBInteraction000394024
WBInteraction000394025
WBInteraction000394026
WBInteraction000394027
WBInteraction000394028
WBInteraction000394029
WBInteraction000394030
WBInteraction000394031
WBInteraction000394032
WBInteraction000394033
WBInteraction000394034
WBInteraction000394035
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WBInteraction000394037
WBInteraction000394038
WBInteraction000394039
WBInteraction000395313
WBInteraction000396654
WBInteraction000398088
WBInteraction000399394
WBInteraction000403766
WBInteraction000404099
WBInteraction000405963
WBInteraction000406411
WBInteraction000408578
WBInteraction000408579
WBInteraction000409081
WBInteraction000409825
WBInteraction000412488
WBInteraction000414044
WBInteraction000416011
WBInteraction000416372
WBInteraction000422397
WBInteraction000423657
WBInteraction000423752
WBInteraction000424740
WBInteraction000426161
WBInteraction000427833
WBInteraction000430343
WBInteraction000434062
WBInteraction000435216
WBInteraction000437916
WBInteraction000438311
WBInteraction000439422
WBInteraction000442173
WBInteraction000444210
WBInteraction000446206
WBInteraction000446857
WBInteraction000451552
WBInteraction000452757
WBInteraction000457519
WBInteraction000458711
WBInteraction000460845
WBInteraction000462166
WBInteraction000462487
WBInteraction000462755
WBInteraction000463123
WBInteraction000463207
WBInteraction000463214
WBInteraction000463299
WBInteraction000463568
WBInteraction000464145
WBInteraction000464293
WBInteraction000465391
WBInteraction000465483
WBInteraction000465520
WBInteraction000465632
WBInteraction000465990
WBInteraction000466078
WBInteraction000466484
WBInteraction000466536
WBInteraction000466618
WBInteraction000466773
WBInteraction000467368
WBInteraction000467532
WBInteraction000467562
WBInteraction000467981
WBInteraction000468119
WBInteraction000468708
WBInteraction000468855
WBInteraction000468864
WBInteraction000468918
WBInteraction000469057
WBInteraction000469388
WBInteraction000469498
WBInteraction000469552
WBInteraction000469708
WBInteraction000469840
WBInteraction000470195
WBInteraction000470343
WBInteraction000470381
WBInteraction000470434
WBInteraction000470452
WBInteraction000471027
WBInteraction000471211
WBInteraction000471416
WBInteraction000471474
WBInteraction000471670
WBInteraction000471745
WBInteraction000471888
WBInteraction000472288
WBInteraction000472441
WBInteraction000472626
WBInteraction000472846
WBInteraction000472900
WBInteraction000473316
WBInteraction000473357
WBInteraction000473561
WBInteraction000473677
WBInteraction000473813
WBInteraction000473826
WBInteraction000474250
WBInteraction000474554
WBInteraction000475408
WBInteraction000475467
WBInteraction000548370
WBInteraction000559350
WBInteraction000563542
WBInteraction000570106
WBInteraction000571075
WBInteraction000572134
WBInteraction000573694
WBInteraction000577910
WBInteraction000580704
WBInteraction000584623
WBInteraction000586050
Map_infoMapIIIPosition5.19412
PositivePositive_cloneK01G5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026935
WBPaper00030479
WBPaper00031949
WBPaper00038491
WBPaper00049828
WBPaper00054284
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene