WormBase Tree Display for Gene: WBGene00010089
expand all nodes | collapse all nodes | view schema
WBGene00010089 | SMap | S_parent | Sequence | F55B12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | hpo-31 | Paper_evidence | WBPaper00038231 | |||||
Person_evidence | WBPerson26 | ||||||||
Sequence_name | F55B12.4 | ||||||||
Molecular_name | F55B12.4 | ||||||||
F55B12.4.1 | |||||||||
CE26815 | |||||||||
F55B12.4.2 | |||||||||
Other_name | CELE_F55B12.4 | Accession_evidence | NDB | BX284605 | |||||
Public_name | hpo-31 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-31 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hpo | ||||||||
Allele (31) | |||||||||
Strain | WBStrain00049382 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOP5404 | ||||||||
Ortholog (36) | |||||||||
Structured_description | Automated_description | Predicted to enable tRNA binding activity. Predicted to be involved in mitochondrial tRNA 3'-end processing and tRNA 3'-terminal CCA addition. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Is an ortholog of human TRNT1 (tRNA nucleotidyl transferase 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0080209 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17341) | ||||
Molecular_info | Corresponding_CDS | F55B12.4 | |||||||
Corresponding_CDS_history | F55B12.4:wp42 | ||||||||
Corresponding_transcript | F55B12.4.1 | ||||||||
F55B12.4.2 | |||||||||
Other_sequence (31) | |||||||||
Associated_feature | WBsf662056 | ||||||||
Experimental_info | RNAi_result (12) | ||||||||
Expr_pattern | Expr1013745 | ||||||||
Expr1034403 | |||||||||
Expr1152241 | |||||||||
Expr2012571 | |||||||||
Expr2030808 | |||||||||
Drives_construct | WBCnstr00031676 | ||||||||
Construct_product | WBCnstr00031676 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (75) | |||||||||
Interaction | WBInteraction000007872 | ||||||||
WBInteraction000047556 | |||||||||
WBInteraction000202144 | |||||||||
WBInteraction000215975 | |||||||||
WBInteraction000256022 | |||||||||
WBInteraction000309031 | |||||||||
WBInteraction000310438 | |||||||||
WBInteraction000332595 | |||||||||
WBInteraction000337866 | |||||||||
WBInteraction000340379 | |||||||||
WBInteraction000408001 | |||||||||
WBInteraction000431926 | |||||||||
WBInteraction000441292 | |||||||||
WBInteraction000576562 | |||||||||
Map_info | Map | V | Position | 5.64395 | Error | 0.014982 | |||
Positive | Positive_clone | F55B12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00061983 | |||||||||
WBPaper00063971 | |||||||||
WBPaper00064934 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |