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WormBase Tree Display for Gene: WBGene00009078

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Name Class

WBGene00009078SMapS_parentSequenceF23B2
IdentityVersion2
Name (5)
DB_infoDatabaseAceViewgene4J910
WormQTLgeneWBGene00009078
WormFluxgeneWBGene00009078
NDBlocus_tagCELE_F23B2.13
PanthergeneCAEEL|WormBase=WBGene00009078|UniProtKB=Q9U3I0
familyPTHR12056
NCBIgene184886
RefSeqproteinNM_001392364.1
NM_069192.2
TrEMBLUniProtAccX5M5N4
Q9U3I0
UniProt_GCRPUniProtAccQ9U3I0
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
208 Oct 2007 14:18:28WBPerson2970Name_changeCGC_namerpb-12
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpb
Allele (16)
StrainWBStrain00049346
RNASeq_FPKM (74)
GO_annotation (16)
OrthologWBGene00040472Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WBGene00063906Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
SGD:S000001185Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0262954Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070820-18Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:9198Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:102725Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:2319895Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and zinc ion binding activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2K (RNA polymerase II, I and III subunit K).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF23B2.13a
F23B2.13b
Corresponding_transcriptF23B2.13a.1
F23B2.13b.1
Other_sequence (303)
Associated_featureWBsf652039
WBsf997367
WBsf230514
Experimental_infoRNAi_result (20)
Expr_patternExpr1013932
Expr1033954
Expr1149312
Expr2015421
Expr2033656
Drives_constructWBCnstr00032482
Construct_productWBCnstr00032482
Microarray_results (17)
Expression_cluster (115)
InteractionWBInteraction000036621
WBInteraction000041486
WBInteraction000041983
WBInteraction000043863
WBInteraction000047937
WBInteraction000102498
WBInteraction000103998
WBInteraction000106388
WBInteraction000106389
WBInteraction000106390
WBInteraction000106560
WBInteraction000106912
WBInteraction000106916
WBInteraction000106917
WBInteraction000106918
WBInteraction000106919
WBInteraction000106920
WBInteraction000108697
WBInteraction000108698
WBInteraction000108699
WBInteraction000109710
WBInteraction000109718
WBInteraction000109719
WBInteraction000109720
WBInteraction000114240
WBInteraction000128337
WBInteraction000128681
WBInteraction000128799
WBInteraction000130162
WBInteraction000130207
WBInteraction000130257
WBInteraction000130349
WBInteraction000130553
WBInteraction000130668
WBInteraction000130980
WBInteraction000131055
WBInteraction000131086
WBInteraction000131146
WBInteraction000131175
WBInteraction000131211
WBInteraction000131212
WBInteraction000131213
WBInteraction000131214
WBInteraction000131215
WBInteraction000131216
WBInteraction000131217
WBInteraction000131218
WBInteraction000131219
WBInteraction000131220
WBInteraction000131221
WBInteraction000131222
WBInteraction000131223
WBInteraction000131224
WBInteraction000131225
WBInteraction000131226
WBInteraction000131227
WBInteraction000131228
WBInteraction000131229
WBInteraction000131230
WBInteraction000131231
WBInteraction000131232
WBInteraction000131233
WBInteraction000131234
WBInteraction000131235
WBInteraction000131236
WBInteraction000131237
WBInteraction000131238
WBInteraction000131239
WBInteraction000131240
WBInteraction000131241
WBInteraction000131242
WBInteraction000131243
WBInteraction000131244
WBInteraction000131245
WBInteraction000131246
WBInteraction000131247
WBInteraction000131248
WBInteraction000131249
WBInteraction000131250
WBInteraction000131251
WBInteraction000131252
WBInteraction000131253
WBInteraction000131254
WBInteraction000131255
WBInteraction000131256
WBInteraction000131257
WBInteraction000131258
WBInteraction000131259
WBInteraction000131260
WBInteraction000131261
WBInteraction000131262
WBInteraction000131263
WBInteraction000131264
WBInteraction000131265
WBInteraction000131266
WBInteraction000131267
WBInteraction000131268
WBInteraction000131269
WBInteraction000131270
WBInteraction000131271
WBInteraction000131272
WBInteraction000131273
WBInteraction000131274
WBInteraction000131275
WBInteraction000131276
WBInteraction000131277
WBInteraction000131278
WBInteraction000131279
WBInteraction000131280
WBInteraction000131281
WBInteraction000131282
WBInteraction000131283
WBInteraction000131284
WBInteraction000131285
WBInteraction000131286
WBInteraction000131287
WBInteraction000131288
WBInteraction000131289
WBInteraction000131290
WBInteraction000131291
WBInteraction000131292
WBInteraction000131293
WBInteraction000131294
WBInteraction000131295
WBInteraction000131296
WBInteraction000131297
WBInteraction000131298
WBInteraction000131299
WBInteraction000131300
WBInteraction000131884
WBInteraction000131926
WBInteraction000132052
WBInteraction000132113
WBInteraction000132158
WBInteraction000132220
WBInteraction000145243
WBInteraction000154126
WBInteraction000167012
WBInteraction000167730
WBInteraction000187003
WBInteraction000200208
WBInteraction000221865
WBInteraction000249361
WBInteraction000273715
WBInteraction000313971
WBInteraction000319501
WBInteraction000321054
WBInteraction000339929
WBInteraction000349901
WBInteraction000395451
WBInteraction000407329
WBInteraction000437299
WBInteraction000443257
WBInteraction000451248
WBInteraction000467055
WBInteraction000473542
WBInteraction000552151
WBInteraction000575256
WBInteraction000575778
Map_infoMapIVPosition4.06918Error0.005755
PositivePositive_cloneF23B2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029038
WBPaper00038491
WBPaper00055090
WBPaper00059527
WBPaper00065275
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene