WormBase Tree Display for Gene: WBGene00007443
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WBGene00007443 | SMap | S_parent | Sequence | C08F8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | pfd-1 | Person_evidence | WBPerson2136 | |||||
WBPerson3663 | |||||||||
Sequence_name | C08F8.1 | ||||||||
Molecular_name | C08F8.1a | ||||||||
C08F8.1a.1 | |||||||||
CE05248 | |||||||||
C08F8.1b | |||||||||
CE45776 | |||||||||
C08F8.1b.1 | |||||||||
Other_name | CELE_C08F8.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | pfd-1 | ||||||||
DB_info | Database (10) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | pfd-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pfd | ||||||||
Allele (15) | |||||||||
Strain | WBStrain00027643 | ||||||||
WBStrain00027644 | |||||||||
WBStrain00002703 | |||||||||
WBStrain00036248 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Contained_in_operon | CEOP4420 | ||||||||
Ortholog (29) | |||||||||
Structured_description | Concise_description | pfd-1 encodes a putative prefoldin subunit 1, orthologous to human PFDN1 (OMIM:604897), that is required for normal microtubule nucleation and growth, embryonic viability, distal tip cell (DTC) migration, and locomotion; PFD-1 is expressed cytoplasmically in most, if not all, tissues; pfd-1(RNAi) animals have sterile progeny and are uncoordinated, and pfd-1(RNAi) embryos show a reduced microtubule growth rate; pfd-1(gk526) or escaper pfd-1(RNAi) hermaphrodites exhibit detective DTC migration. | Paper_evidence | WBPaper00004651 | |||||
WBPaper00005654 | |||||||||
WBPaper00006395 | |||||||||
WBPaper00024497 | |||||||||
WBPaper00026660 | |||||||||
WBPaper00031309 | |||||||||
WBPaper00031362 | |||||||||
WBPaper00031363 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
Automated_description | Predicted to enable protein folding chaperone and unfolded protein binding activity. Involved in gonad development. Located in cytoplasm. Expressed in head muscle; pharyngeal muscle cell; and vulval muscle. Is an ortholog of human PFDN1 (prefoldin subunit 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C08F8.1a | |||||||
C08F8.1b | |||||||||
Corresponding_transcript | C08F8.1a.1 | ||||||||
C08F8.1b.1 | |||||||||
Other_sequence (24) | |||||||||
Associated_feature | WBsf646357 | ||||||||
WBsf229107 | |||||||||
Experimental_info | RNAi_result (34) | ||||||||
Expr_pattern | Expr5210 | ||||||||
Expr7839 | |||||||||
Expr7844 | |||||||||
Expr9564 | |||||||||
Expr1028881 | |||||||||
Expr1033205 | |||||||||
Expr1144198 | |||||||||
Expr2014841 | |||||||||
Expr2033076 | |||||||||
Drives_construct | WBCnstr00001362 | ||||||||
WBCnstr00001364 | |||||||||
WBCnstr00003245 | |||||||||
WBCnstr00033735 | |||||||||
Construct_product | WBCnstr00033735 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (83) | |||||||||
Interaction | WBInteraction000046190 | ||||||||
WBInteraction000046499 | |||||||||
WBInteraction000114341 | |||||||||
WBInteraction000159032 | |||||||||
WBInteraction000159042 | |||||||||
WBInteraction000163022 | |||||||||
WBInteraction000163023 | |||||||||
WBInteraction000163024 | |||||||||
WBInteraction000163025 | |||||||||
WBInteraction000169838 | |||||||||
WBInteraction000174090 | |||||||||
WBInteraction000213876 | |||||||||
WBInteraction000244239 | |||||||||
WBInteraction000244255 | |||||||||
WBInteraction000267170 | |||||||||
WBInteraction000267191 | |||||||||
WBInteraction000292104 | |||||||||
WBInteraction000296931 | |||||||||
WBInteraction000339365 | |||||||||
WBInteraction000351246 | |||||||||
WBInteraction000353675 | |||||||||
WBInteraction000381400 | |||||||||
WBInteraction000390550 | |||||||||
WBInteraction000435422 | |||||||||
WBInteraction000577831 | |||||||||
WBInteraction000580538 | |||||||||
Map_info | Map | IV | Position | 4.91006 | Error | 0.00115 | |||
Positive | Positive_clone | C08F8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031309 | ||||||||
WBPaper00038444 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |