WormBase Tree Display for Gene: WBGene00006915
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WBGene00006915 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | vha-6 | |||||||
Sequence_name | VW02B12L.1 | ||||||||
Molecular_name | VW02B12L.1 | ||||||||
VW02B12L.1.1 | |||||||||
CE18980 | |||||||||
Other_name | CELE_VW02B12L.1 | Accession_evidence | NDB | BX284602 | |||||
Public_name | vha-6 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | vha | ||||||||
Allele (54) | |||||||||
Legacy_information | [Pujol N] vha-6 is expressed only in the intestine, from the embryonic coma stage through larvae and adult | ||||||||
Strain | WBStrain00036524 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (58) | |||||||||
Paralog (3) | |||||||||
Structured_description | Concise_description | vha-6 encodes an ortholog of subunit a of the membrane-bound (V0) domainof vacuolar proton-translocating ATPase (V-ATPase); VHA-6 is orthologousto human ATP6N1A (OMIM:192130), ATP6V0A2, ATP6V0A4 (OMIM:605239, mutatedin distal renal tubular acidosis), and TCIRG1 (OMIM:604592, mutated inosteopetrosis); VHA-6 is expressed in germline (P2 through Z3 cellsuntil the comma stage), on the apical surface of postembryonicintestinal cells, and at the junction between pharynx and intestine;VHA-6 is required for growth and survival past the L1 larval stage;vha-6(RNAi) animals arrest as L1 larvae and remain alive (but do notgrow) for one week; in S. cerevisiae, different V0 a-subunits (Stv1p andVph1p) direct the assembly of V-ATPases to different membranes andorganelles, suggesting that the profusion of such subunits in C. elegans(co-orthologous VHA-5, VHA-6, VHA-7, and six UNC-32 isoforms) may have asimilar function; VHA-6 is predicted to capture protons from V-ATPasetransmembrane rotor components and export the protons across themembrane. | Paper_evidence | WBPaper00004601 | |||||
WBPaper00004842 | |||||||||
WBPaper00025183 | |||||||||
WBPaper00028773 | |||||||||
WBPaper00028774 | |||||||||
WBPaper00028775 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 19 Nov 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable ATPase binding activity. Involved in nematode larval development. Located in apical plasma membrane. Part of vacuolar proton-transporting V-type ATPase complex. Expressed in Psub2; excretory cell; hypodermis; pharyngeal-intestinal valve; and uterus. Human ortholog(s) of this gene implicated in several diseases, including autosomal recessive cutis laxa type IIA; autosomal recessive osteopetrosis 1; and developmental and epileptic encephalopathy 104. Is an ortholog of several human genes including ATP6V0A1 (ATPase H+ transporting V0 subunit a1); ATP6V0A2 (ATPase H+ transporting V0 subunit a2); and TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0070390 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:865) | ||||
DOID:0110942 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11647) | ||||||
DOID:14219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:866) | ||||||
DOID:0112171 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18481) | ||||||
EFO:MONDO:0015827 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:866) | ||||||
DOID:0070134 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18481) | ||||||
Molecular_info | Corresponding_CDS | VW02B12L.1 | |||||||
Corresponding_transcript | VW02B12L.1.1 | ||||||||
Other_sequence (71) | |||||||||
Associated_feature | WBsf650573 | ||||||||
WBsf650574 | |||||||||
WBsf989758 | |||||||||
WBsf1013237 | |||||||||
WBsf223933 | |||||||||
Experimental_info | RNAi_result (55) | ||||||||
Expr_pattern | Expr851 | ||||||||
Expr2404 | |||||||||
Expr2407 | |||||||||
Expr13465 | |||||||||
Expr1029215 | |||||||||
Expr1032932 | |||||||||
Expr1158019 | |||||||||
Expr2017992 | |||||||||
Expr2036128 | |||||||||
Drives_construct (205) | |||||||||
Construct_product | WBCnstr00013297 | ||||||||
WBCnstr00016253 | |||||||||
WBCnstr00038389 | |||||||||
Antibody | WBAntibody00000406 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (230) | |||||||||
Interaction | WBInteraction000034752 | ||||||||
WBInteraction000036295 | |||||||||
WBInteraction000038689 | |||||||||
WBInteraction000039152 | |||||||||
WBInteraction000039153 | |||||||||
WBInteraction000040241 | |||||||||
WBInteraction000040542 | |||||||||
WBInteraction000040618 | |||||||||
WBInteraction000042300 | |||||||||
WBInteraction000044264 | |||||||||
WBInteraction000044924 | |||||||||
WBInteraction000045477 | |||||||||
WBInteraction000045583 | |||||||||
WBInteraction000047135 | |||||||||
WBInteraction000047331 | |||||||||
WBInteraction000052689 | |||||||||
WBInteraction000117996 | |||||||||
WBInteraction000118133 | |||||||||
WBInteraction000119012 | |||||||||
WBInteraction000122021 | |||||||||
WBInteraction000134136 | |||||||||
WBInteraction000134138 | |||||||||
WBInteraction000136929 | |||||||||
WBInteraction000136930 | |||||||||
WBInteraction000138066 | |||||||||
WBInteraction000141408 | |||||||||
WBInteraction000141579 | |||||||||
WBInteraction000142249 | |||||||||
WBInteraction000145224 | |||||||||
WBInteraction000146843 | |||||||||
WBInteraction000152521 | |||||||||
WBInteraction000162125 | |||||||||
WBInteraction000168469 | |||||||||
WBInteraction000171761 | |||||||||
WBInteraction000176431 | |||||||||
WBInteraction000177060 | |||||||||
WBInteraction000179128 | |||||||||
WBInteraction000182015 | |||||||||
WBInteraction000183369 | |||||||||
WBInteraction000197313 | |||||||||
WBInteraction000208971 | |||||||||
WBInteraction000209433 | |||||||||
WBInteraction000213194 | |||||||||
WBInteraction000213874 | |||||||||
WBInteraction000219177 | |||||||||
WBInteraction000220131 | |||||||||
WBInteraction000224290 | |||||||||
WBInteraction000225015 | |||||||||
WBInteraction000226886 | |||||||||
WBInteraction000232000 | |||||||||
WBInteraction000237010 | |||||||||
WBInteraction000249278 | |||||||||
WBInteraction000249395 | |||||||||
WBInteraction000260037 | |||||||||
WBInteraction000263360 | |||||||||
WBInteraction000263492 | |||||||||
WBInteraction000265563 | |||||||||
WBInteraction000270198 | |||||||||
WBInteraction000271058 | |||||||||
WBInteraction000273261 | |||||||||
WBInteraction000276524 | |||||||||
WBInteraction000282586 | |||||||||
WBInteraction000289009 | |||||||||
WBInteraction000289986 | |||||||||
WBInteraction000296239 | |||||||||
WBInteraction000296363 | |||||||||
WBInteraction000304117 | |||||||||
WBInteraction000307263 | |||||||||
WBInteraction000308207 | |||||||||
WBInteraction000324435 | |||||||||
WBInteraction000331612 | |||||||||
WBInteraction000331613 | |||||||||
WBInteraction000331859 | |||||||||
WBInteraction000346589 | |||||||||
WBInteraction000348263 | |||||||||
WBInteraction000348801 | |||||||||
WBInteraction000350508 | |||||||||
WBInteraction000353533 | |||||||||
WBInteraction000353890 | |||||||||
WBInteraction000364594 | |||||||||
WBInteraction000368433 | |||||||||
WBInteraction000369788 | |||||||||
WBInteraction000374409 | |||||||||
WBInteraction000374785 | |||||||||
WBInteraction000374867 | |||||||||
WBInteraction000378842 | |||||||||
WBInteraction000379891 | |||||||||
WBInteraction000380118 | |||||||||
WBInteraction000386701 | |||||||||
WBInteraction000387488 | |||||||||
WBInteraction000405405 | |||||||||
WBInteraction000416300 | |||||||||
WBInteraction000419078 | |||||||||
WBInteraction000423798 | |||||||||
WBInteraction000424604 | |||||||||
WBInteraction000425119 | |||||||||
WBInteraction000425701 | |||||||||
WBInteraction000436424 | |||||||||
WBInteraction000437537 | |||||||||
WBInteraction000438069 | |||||||||
WBInteraction000438829 | |||||||||
WBInteraction000438932 | |||||||||
WBInteraction000440595 | |||||||||
WBInteraction000442760 | |||||||||
WBInteraction000443455 | |||||||||
WBInteraction000444385 | |||||||||
WBInteraction000445584 | |||||||||
WBInteraction000445870 | |||||||||
WBInteraction000445871 | |||||||||
WBInteraction000450897 | |||||||||
WBInteraction000465933 | |||||||||
WBInteraction000525298 | |||||||||
WBInteraction000525299 | |||||||||
WBInteraction000525300 | |||||||||
WBInteraction000552413 | |||||||||
WBInteraction000552903 | |||||||||
WBInteraction000555652 | |||||||||
WBInteraction000564400 | |||||||||
WBInteraction000570979 | |||||||||
WBInteraction000572706 | |||||||||
WBInteraction000578656 | |||||||||
WBInteraction000580496 | |||||||||
WBInteraction000583158 | |||||||||
Map_info | Map | II | Position | 3.46558 | Error | 0.000297 | |||
Positive | Positive_clone | VW02B12L | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (28) | |||||||||
Remark | Sequence From: Pujol Nathalie via ACEDB feedback page <pujol@lgpd.univ-mrs.fr> | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |