WormBase Tree Display for Gene: WBGene00006698

WBGene00006698 Evidence: Person_evidence: WBPerson71
  SMap: S_parent: Sequence: Y116A8C
  Identity: Version: 1
    Name: CGC_name: uaf-2 Person_evidence: WBPerson71
      Sequence_name: Y116A8C.35
      Molecular_name: Y116A8C.35a
        Y116A8C.35a.1
        CE23341
        Y116A8C.35b
        CE50583
        Y116A8C.35a.2
        Y116A8C.35b.1
      Other_name: CELE_Y116A8C.35 Accession_evidence: NDB BX284604
      Public_name: uaf-2
    DB_info: Database: AceView gene 4S62
        WormQTL gene WBGene00006698
        WormFlux gene WBGene00006698
        NDB locus_tag CELE_Y116A8C.35
        Panther gene CAEEL|EnsemblGenome=WBGene00006698|UniProtKB=Q9U2U0
          family PTHR12620
        NCBI gene 178489
        RefSeq protein NM_001313048.3
            NM_070635.6
        TrEMBL UniProtAcc Q9U2U0
            A0A0K3AXF6
        UniProt_GCRP UniProtAcc Q9U2U0
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: uaf
    Allele (47)
    Strain: WBStrain00037620
      WBStrain00051006
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP4596
    Ortholog (38)
    Structured_description: Concise_description: uaf-2 encodes an essential U2AF35 homolog clustered in an operon with cyp-13 (RRM/cyclophilin); UAF-2's sequence is somewhat atypical for U2AF proteins (it lacks an identifiable N-terminal RNA-binding RS domain, while having an glycine-rich C-terminal region). Paper_evidence: WBPaper00003463
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enables pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Is an ortholog of human U2AF1 (U2 small nuclear RNA auxiliary factor 1) and U2AF1L4 (U2 small nuclear RNA auxiliary factor 1 like 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (2)
    Corresponding_transcript: Y116A8C.35a.1
      Y116A8C.35a.2
      Y116A8C.35b.1
    Other_sequence (126)
    Associated_feature: WBsf652414
      WBsf981870
      WBsf998975
      WBsf998976
      WBsf998977
      WBsf1018949
      WBsf1018950
      WBsf1018951
    Gene_product_binds: WBsf034320
    Transcription_factor: WBTranscriptionFactor000121
  Experimental_info: RNAi_result (28)
    Expr_pattern: Expr6892
      Expr1019162
      Expr1032781
      Expr1158964
      Expr2017694
      Expr2035832
    Drives_construct: WBCnstr00004191
    Microarray_results (17)
    Expression_cluster (94)
    Interaction: WBInteraction000009395
      WBInteraction000034944
      WBInteraction000034945
      WBInteraction000042161
      WBInteraction000105531
      WBInteraction000106167
      WBInteraction000106217
      WBInteraction000106445
      WBInteraction000106631
      WBInteraction000106643
      WBInteraction000106650
      WBInteraction000106664
      WBInteraction000106688
      WBInteraction000106697
      WBInteraction000106735
      WBInteraction000106736
      WBInteraction000106737
      WBInteraction000106738
      WBInteraction000106739
      WBInteraction000106752
      WBInteraction000106787
      WBInteraction000106796
      WBInteraction000106820
      WBInteraction000106833
      WBInteraction000107426
      WBInteraction000107435
      WBInteraction000108672
      WBInteraction000108676
      WBInteraction000108728
      WBInteraction000108772
      WBInteraction000125178
      WBInteraction000125179
      WBInteraction000125416
      WBInteraction000125468
      WBInteraction000125471
      WBInteraction000125587
      WBInteraction000125592
      WBInteraction000125615
      WBInteraction000125671
      WBInteraction000126511
      WBInteraction000126617
      WBInteraction000127653
      WBInteraction000127871
      WBInteraction000127915
      WBInteraction000128266
      WBInteraction000128547
      WBInteraction000128769
      WBInteraction000128868
      WBInteraction000128921
      WBInteraction000130305
      WBInteraction000130320
      WBInteraction000130347
      WBInteraction000130600
      WBInteraction000130601
      WBInteraction000130602
      WBInteraction000130603
      WBInteraction000130604
      WBInteraction000130605
      WBInteraction000130606
      WBInteraction000130607
      WBInteraction000130608
      WBInteraction000130609
      WBInteraction000130610
      WBInteraction000130611
      WBInteraction000130612
      WBInteraction000130754
      WBInteraction000130905
      WBInteraction000130978
      WBInteraction000131053
      WBInteraction000131264
      WBInteraction000131343
      WBInteraction000131501
      WBInteraction000131566
      WBInteraction000131710
      WBInteraction000131875
      WBInteraction000131988
      WBInteraction000132156
      WBInteraction000132218
      WBInteraction000132365
      WBInteraction000132426
      WBInteraction000132491
      WBInteraction000132705
      WBInteraction000158962
      WBInteraction000159290
      WBInteraction000159395
      WBInteraction000169720
      WBInteraction000191790
      WBInteraction000199612
      WBInteraction000204929
      WBInteraction000258072
      WBInteraction000258580
      WBInteraction000263177
      WBInteraction000270289
      WBInteraction000284464
      WBInteraction000288398
      WBInteraction000300890
      WBInteraction000306887
      WBInteraction000307349
      WBInteraction000307963
      WBInteraction000308880
      WBInteraction000314670
      WBInteraction000315193
      WBInteraction000317261
      WBInteraction000325120
      WBInteraction000327735
      WBInteraction000330258
      WBInteraction000331910
      WBInteraction000332084
      WBInteraction000338822
      WBInteraction000339120
      WBInteraction000339802
      WBInteraction000346934
      WBInteraction000349267
      WBInteraction000349722
      WBInteraction000359072
      WBInteraction000367721
      WBInteraction000374708
      WBInteraction000375984
      WBInteraction000402499
      WBInteraction000403114
      WBInteraction000403198
      WBInteraction000406167
      WBInteraction000406653
      WBInteraction000408617
      WBInteraction000428877
      WBInteraction000430908
      WBInteraction000436406
      WBInteraction000439868
      WBInteraction000445349
      WBInteraction000448164
      WBInteraction000453747
      WBInteraction000462194
      WBInteraction000462198
      WBInteraction000507515
      WBInteraction000507516
      WBInteraction000507517
      WBInteraction000507518
      WBInteraction000507519
      WBInteraction000507522
      WBInteraction000507523
      WBInteraction000507524
      WBInteraction000507526
      WBInteraction000507527
      WBInteraction000507528
      WBInteraction000507529
      WBInteraction000507531
      WBInteraction000507532
      WBInteraction000507535
      WBInteraction000507536
      WBInteraction000507537
      WBInteraction000507539
      WBInteraction000507540
      WBInteraction000507542
      WBInteraction000507543
      WBInteraction000507544
      WBInteraction000507545
      WBInteraction000507547
      WBInteraction000507548
      WBInteraction000507549
      WBInteraction000507550
      WBInteraction000507552
      WBInteraction000507553
      WBInteraction000507554
      WBInteraction000507555
      WBInteraction000507556
      WBInteraction000507557
      WBInteraction000507558
      WBInteraction000507559
      WBInteraction000507560
      WBInteraction000507562
      WBInteraction000507563
      WBInteraction000507564
      WBInteraction000507565
      WBInteraction000507566
      WBInteraction000507568
      WBInteraction000514168
      WBInteraction000514169
      WBInteraction000514170
      WBInteraction000514171
      WBInteraction000514173
      WBInteraction000514175
      WBInteraction000514178
      WBInteraction000514179
      WBInteraction000514187
      WBInteraction000528057
      WBInteraction000534972
      WBInteraction000535030
      WBInteraction000535081
      WBInteraction000535123
      WBInteraction000535186
      WBInteraction000535201
      WBInteraction000535237
      WBInteraction000535249
      WBInteraction000535292
      WBInteraction000535324
      WBInteraction000535389
      WBInteraction000538897
      WBInteraction000541157
      WBInteraction000548734
      WBInteraction000549014
      WBInteraction000549392
      WBInteraction000559561
      WBInteraction000567042
      WBInteraction000568659
      WBInteraction000571632
      WBInteraction000571644
      WBInteraction000571656
      WBInteraction000585506
  Map_info: Map: IV Position: 16.1894 Error: 0.007025
    Positive: Positive_clone: Y116A8C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (15)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene