WormBase Tree Display for Gene: WBGene00006386

WBGene00006386 SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: taf-5
      Sequence_name: F30F8.8
      Molecular_name: F30F8.8
        F30F8.8.1
        CE39361
        F30F8.8.2
      Other_name: CELE_F30F8.8 Accession_evidence: NDB BX284601
      Public_name: taf-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: taf
    Allele (60)
    Strain: WBStrain00002973
    RNASeq_FPKM (74)
    GO_annotation: 00017525
      00017526
      00017527
      00017528
      00017529
      00017530
      00017531
      00017532
      00017533
      00017534
    Contained_in_operon: CEOP1428
    Ortholog (37)
    Structured_description: Automated_description: Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in embryo development and transcription by RNA polymerase II. Located in nucleus. Is an ortholog of human TAF5 (TATA-box binding protein associated factor 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F30F8.8
    Corresponding_CDS_history: F30F8.8:wp151
    Corresponding_transcript: F30F8.8.1
      F30F8.8.2
    Other_sequence (25)
    Associated_feature: WBsf643490
      WBsf643491
      WBsf656571
      WBsf656572
      WBsf656573
      WBsf984293
      WBsf1010152
      WBsf218076
    Transcription_factor: WBTranscriptionFactor000380
  Experimental_info: RNAi_result (40)
    Expr_pattern: Expr3569
      Expr5919
      Expr1012108
      Expr1032583
      Expr1149870
      Expr2017215
      Expr2035351
    Drives_construct: WBCnstr00003478
      WBCnstr00034379
    Construct_product: WBCnstr00011493
      WBCnstr00034379
    Antibody: WBAntibody00000605
    Microarray_results (22)
    Expression_cluster (93)
    Interaction: WBInteraction000003461
      WBInteraction000003462
      WBInteraction000003463
      WBInteraction000009692
      WBInteraction000028430
      WBInteraction000030877
      WBInteraction000033589
      WBInteraction000033627
      WBInteraction000033921
      WBInteraction000033922
      WBInteraction000034598
      WBInteraction000034606
      WBInteraction000034698
      WBInteraction000035847
      WBInteraction000037660
      WBInteraction000037838
      WBInteraction000038460
      WBInteraction000038684
      WBInteraction000038697
      WBInteraction000040832
      WBInteraction000041884
      WBInteraction000042645
      WBInteraction000042760
      WBInteraction000042878
      WBInteraction000043218
      WBInteraction000043219
      WBInteraction000043382
      WBInteraction000043817
      WBInteraction000043861
      WBInteraction000043862
      WBInteraction000044153
      WBInteraction000045378
      WBInteraction000046269
      WBInteraction000049752
      WBInteraction000103374
      WBInteraction000103653
      WBInteraction000104716
      WBInteraction000105584
      WBInteraction000105588
      WBInteraction000105591
      WBInteraction000106997
      WBInteraction000106998
      WBInteraction000106999
      WBInteraction000107141
      WBInteraction000107187
      WBInteraction000107188
      WBInteraction000107197
      WBInteraction000107399
      WBInteraction000108985
      WBInteraction000108986
      WBInteraction000117836
      WBInteraction000125037
      WBInteraction000130442
      WBInteraction000130443
      WBInteraction000130444
      WBInteraction000130445
      WBInteraction000130446
      WBInteraction000130447
      WBInteraction000130448
      WBInteraction000130449
      WBInteraction000130450
      WBInteraction000130451
      WBInteraction000130452
      WBInteraction000130453
      WBInteraction000130454
      WBInteraction000130455
      WBInteraction000130456
      WBInteraction000130457
      WBInteraction000130458
      WBInteraction000130459
      WBInteraction000130460
      WBInteraction000130461
      WBInteraction000130741
      WBInteraction000130893
      WBInteraction000131252
      WBInteraction000131864
      WBInteraction000131977
      WBInteraction000132353
      WBInteraction000136919
      WBInteraction000138073
      WBInteraction000138618
      WBInteraction000143212
      WBInteraction000146143
      WBInteraction000147767
      WBInteraction000150668
      WBInteraction000157011
      WBInteraction000165170
      WBInteraction000166336
      WBInteraction000166337
      WBInteraction000166338
      WBInteraction000167797
      WBInteraction000171222
      WBInteraction000172745
      WBInteraction000173871
      WBInteraction000177734
      WBInteraction000178328
      WBInteraction000178779
      WBInteraction000182429
      WBInteraction000184192
      WBInteraction000187728
      WBInteraction000191767
      WBInteraction000193795
      WBInteraction000194098
      WBInteraction000199877
      WBInteraction000203635
      WBInteraction000204013
      WBInteraction000213146
      WBInteraction000223097
      WBInteraction000232703
      WBInteraction000244883
      WBInteraction000245157
      WBInteraction000245229
      WBInteraction000247359
      WBInteraction000247950
      WBInteraction000256328
      WBInteraction000260708
      WBInteraction000269439
      WBInteraction000277190
      WBInteraction000279036
      WBInteraction000280755
      WBInteraction000291204
      WBInteraction000296983
      WBInteraction000302361
      WBInteraction000304993
      WBInteraction000308736
      WBInteraction000308993
      WBInteraction000321467
      WBInteraction000325311
      WBInteraction000328843
      WBInteraction000333898
      WBInteraction000340888
      WBInteraction000341232
      WBInteraction000341468
      WBInteraction000342593
      WBInteraction000349378
      WBInteraction000349379
      WBInteraction000349380
      WBInteraction000349381
      WBInteraction000349382
      WBInteraction000349383
      WBInteraction000350031
      WBInteraction000351688
      WBInteraction000352201
      WBInteraction000354288
      WBInteraction000359509
      WBInteraction000361985
      WBInteraction000364762
      WBInteraction000364763
      WBInteraction000364764
      WBInteraction000364765
      WBInteraction000364766
      WBInteraction000368885
      WBInteraction000370502
      WBInteraction000378746
      WBInteraction000380159
      WBInteraction000386636
      WBInteraction000388395
      WBInteraction000388396
      WBInteraction000388397
      WBInteraction000388398
      WBInteraction000388986
      WBInteraction000398871
      WBInteraction000406849
      WBInteraction000412714
      WBInteraction000417221
      WBInteraction000422764
      WBInteraction000425693
      WBInteraction000429630
      WBInteraction000440867
      WBInteraction000444498
      WBInteraction000444661
      WBInteraction000446704
      WBInteraction000449054
      WBInteraction000450395
      WBInteraction000455433
      WBInteraction000459551
      WBInteraction000459620
      WBInteraction000460532
      WBInteraction000501834
      WBInteraction000501835
      WBInteraction000501836
      WBInteraction000501837
      WBInteraction000501838
      WBInteraction000501839
      WBInteraction000501840
      WBInteraction000501841
      WBInteraction000501842
      WBInteraction000501843
      WBInteraction000501844
      WBInteraction000501845
      WBInteraction000501846
      WBInteraction000501847
      WBInteraction000526922
      WBInteraction000566942
  Map_info: Map: I Position: 2.37598 Error: 0.00155
    Positive: Positive_clone: F30F8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004890
    WBPaper00005725
    WBPaper00006475
    WBPaper00018966
    WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00048493
    WBPaper00055090
    WBPaper00065308
  Remark: Sequence connection from [source: A Walker]
    This gene was previously called taf-4 [krb 020614]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene