WormBase Tree Display for Gene: WBGene00004465

WBGene00004465 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: T06D8
  Identity: Version: 1
    Name: CGC_name: rpn-9 Person_evidence: WBPerson1551
      Sequence_name: T06D8.8
      Molecular_name: T06D8.8
        T06D8.8.1
        CE02329
      Other_name: CELE_T06D8.8 Accession_evidence: NDB BX284602
      Public_name: rpn-9
    DB_info: Database: AceView gene 2L528
        WormQTL gene WBGene00004465
        WormFlux gene WBGene00004465
        NDB locus_tag CELE_T06D8.8
        Panther gene CAEEL|WormBase=WBGene00004465|UniProtKB=Q22253
          family PTHR10539
        NCBI gene 174715
        RefSeq protein NM_064004.8
        TREEFAM TREEFAM_ID TF105612
        TrEMBL UniProtAcc Q22253
        UniProt_GCRP UniProtAcc Q22253
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (16)
    Strain: WBStrain00036223
      WBStrain00054676
      WBStrain00054679
    Component_of_genotype: WBGenotype00000100
    RNASeq_FPKM (74)
    GO_annotation: 00074684
      00074685
      00074686
      00074687
      00074688
      00074689
      00074690
      00074691
      00074692
      00074693
    Contained_in_operon: CEOP2524
    Ortholog (35)
    Structured_description: Concise_description: rpn-9 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that that affects body morphology, embryonic viability, locomotion, larval viability, fertility, and growth; interacts with RPN-11 in yeast two-hybrid assays. Paper_evidence: WBPaper00004888
            WBPaper00005599
            WBPaper00005654
            WBPaper00006395
          Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable structural molecule activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Is an ortholog of human PSMD13 (proteasome 26S subunit, non-ATPase 13). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Modifies_disease: DOID:332
    DOID:9255
  Modifies_disease_in_annotation: WBDOannot00001141
    WBDOannot00001142
  Molecular_info: Corresponding_CDS: T06D8.8
    Corresponding_transcript: T06D8.8.1
    Other_sequence (81)
    Associated_feature: WBsf650554
      WBsf650555
      WBsf650556
      WBsf981282
      WBsf223910
      WBsf223911
  Experimental_info: RNAi_result (26)
    Expr_pattern: Chronogram435
      Expr6621
      Expr1027703
      Expr1032268
      Expr1156253
      Expr2015497
      Expr2033732
    Drives_construct: WBCnstr00003961
      WBCnstr00035464
    Construct_product: WBCnstr00035464
    Microarray_results (22)
    Expression_cluster (163)
    Interaction: WBInteraction000008836
      WBInteraction000009132
      WBInteraction000032721
      WBInteraction000035836
      WBInteraction000036503
      WBInteraction000036508
      WBInteraction000036509
      WBInteraction000036510
      WBInteraction000036958
      WBInteraction000037782
      WBInteraction000037928
      WBInteraction000038442
      WBInteraction000038443
      WBInteraction000039000
      WBInteraction000040135
      WBInteraction000041298
      WBInteraction000041460
      WBInteraction000042492
      WBInteraction000043684
      WBInteraction000043685
      WBInteraction000043687
      WBInteraction000043688
      WBInteraction000043689
      WBInteraction000043690
      WBInteraction000043691
      WBInteraction000043692
      WBInteraction000043816
      WBInteraction000043822
      WBInteraction000043833
      WBInteraction000043845
      WBInteraction000043846
      WBInteraction000043847
      WBInteraction000044137
      WBInteraction000045148
      WBInteraction000046381
      WBInteraction000046592
      WBInteraction000046604
      WBInteraction000046609
      WBInteraction000046610
      WBInteraction000046611
      WBInteraction000046612
      WBInteraction000046622
      WBInteraction000046629
      WBInteraction000046630
      WBInteraction000046631
      WBInteraction000047329
      WBInteraction000047558
      WBInteraction000047703
      WBInteraction000050004
      WBInteraction000050411
      WBInteraction000050772
      WBInteraction000050806
      WBInteraction000101814
      WBInteraction000101967
      WBInteraction000102437
      WBInteraction000102506
      WBInteraction000102812
      WBInteraction000102852
      WBInteraction000103018
      WBInteraction000103613
      WBInteraction000103722
      WBInteraction000103774
      WBInteraction000103804
      WBInteraction000103984
      WBInteraction000104446
      WBInteraction000104760
      WBInteraction000104763
      WBInteraction000105028
      WBInteraction000105670
      WBInteraction000106208
      WBInteraction000106288
      WBInteraction000106981
      WBInteraction000109758
      WBInteraction000109759
      WBInteraction000109812
      WBInteraction000111448
      WBInteraction000111462
      WBInteraction000111472
      WBInteraction000111490
      WBInteraction000111498
      WBInteraction000111531
      WBInteraction000111593
      WBInteraction000111594
      WBInteraction000111595
      WBInteraction000111596
      WBInteraction000111742
      WBInteraction000111761
      WBInteraction000111918
      WBInteraction000112051
      WBInteraction000113682
      WBInteraction000118164
      WBInteraction000120234
      WBInteraction000120584
      WBInteraction000124081
      WBInteraction000124082
      WBInteraction000144848
      WBInteraction000148602
      WBInteraction000148888
      WBInteraction000149682
      WBInteraction000153589
      WBInteraction000154982
      WBInteraction000154983
      WBInteraction000154984
      WBInteraction000156783
      WBInteraction000158765
      WBInteraction000160029
      WBInteraction000182673
      WBInteraction000184800
      WBInteraction000185391
      WBInteraction000185546
      WBInteraction000185714
      WBInteraction000230717
      WBInteraction000247660
      WBInteraction000248259
      WBInteraction000278921
      WBInteraction000281940
      WBInteraction000284563
      WBInteraction000312956
      WBInteraction000317223
      WBInteraction000318214
      WBInteraction000321545
      WBInteraction000324360
      WBInteraction000326854
      WBInteraction000329461
      WBInteraction000334712
      WBInteraction000335142
      WBInteraction000338572
      WBInteraction000345591
      WBInteraction000356792
      WBInteraction000371843
      WBInteraction000379022
      WBInteraction000379050
      WBInteraction000387235
      WBInteraction000402858
      WBInteraction000408671
      WBInteraction000417561
      WBInteraction000421987
      WBInteraction000422261
      WBInteraction000423557
      WBInteraction000430702
      WBInteraction000434801
      WBInteraction000438884
      WBInteraction000447865
      WBInteraction000448410
      WBInteraction000450336
      WBInteraction000450765
      WBInteraction000450820
      WBInteraction000450821
      WBInteraction000458241
      WBInteraction000463864
      WBInteraction000464543
      WBInteraction000467560
      WBInteraction000470998
      WBInteraction000473786
      WBInteraction000473806
      WBInteraction000473970
      WBInteraction000473978
      WBInteraction000475231
      WBInteraction000475232
      WBInteraction000504461
      WBInteraction000518074
      WBInteraction000518116
      WBInteraction000518194
      WBInteraction000518248
      WBInteraction000518280
      WBInteraction000518331
      WBInteraction000523591
      WBInteraction000523592
      WBInteraction000541845
      WBInteraction000543417
      WBInteraction000551132
      WBInteraction000551133
      WBInteraction000551134
      WBInteraction000551916
      WBInteraction000554065
      WBInteraction000554356
      WBInteraction000554444
      WBInteraction000555129
      WBInteraction000560519
      WBInteraction000560520
      WBInteraction000560521
      WBInteraction000561489
      WBInteraction000562671
      WBInteraction000563101
      WBInteraction000564235
      WBInteraction000564813
      WBInteraction000567020
      WBInteraction000568466
      WBInteraction000572004
      WBInteraction000577051
      WBInteraction000577201
      WBInteraction000580342
      WBInteraction000585131
  Map_info (4)
  Reference (15)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene