WormBase Tree Display for Gene: WBGene00004456

WBGene00004456 SMap: S_parent: Sequence: Y48B6A
  Identity: Version: 1
    Name: CGC_name: rpl-43
      Sequence_name: Y48B6A.2
      Molecular_name: Y48B6A.2
        Y48B6A.2.1
        CE22117
      Other_name: CELE_Y48B6A.2 Accession_evidence: NDB BX284602
      Public_name: rpl-43
    DB_info: Database: AceView gene 2O445
        WormQTL gene WBGene00004456
        WormFlux gene WBGene00004456
        NDB locus_tag CELE_Y48B6A.2
        Panther gene CAEEL|WormBase=WBGene00004456|UniProtKB=Q9U2A8
          family PTHR48160
        NCBI gene 175070
        RefSeq protein NM_064556.7
        SwissProt UniProtAcc Q9U2A8
        TREEFAM TREEFAM_ID TF313068
        UniProt_GCRP UniProtAcc Q9U2A8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele: WBVar01499702
      WBVar00787168
      WBVar00787169
      WBVar00787170
      WBVar01498435
      WBVar00384531
      WBVar02125760
      WBVar01721525
      WBVar01498941
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl43 using blastP
    Strain: WBStrain00008594
    RNASeq_FPKM (74)
    GO_annotation: 00098976
      00098977
      00098978
      00098979
      00098980
      00112925
      00112926
      00112927
    Contained_in_operon: CEOP2697
    Ortholog (41)
    Structured_description: Concise_description: rpl-43 encodes a large ribosomal subunit L37a protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable metal ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL37A (ribosomal protein L37a). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48B6A.2
    Corresponding_transcript: Y48B6A.2.1
    Other_sequence (302)
    Associated_feature (6)
  Experimental_info: RNAi_result: WBRNAi00056880 Inferred_automatically: RNAi_primary
      WBRNAi00009353 Inferred_automatically: RNAi_primary
      WBRNAi00026752 Inferred_automatically: RNAi_primary
      WBRNAi00033396 Inferred_automatically: RNAi_primary
      WBRNAi00111880 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017921
      Expr1032259
      Expr1160332
      Expr2015477
      Expr2033712
    Microarray_results (25)
    Expression_cluster (145)
    Interaction: WBInteraction000029870
      WBInteraction000045760
      WBInteraction000103560
      WBInteraction000107460
      WBInteraction000107469
      WBInteraction000107508
      WBInteraction000107541
      WBInteraction000107554
      WBInteraction000107560
      WBInteraction000107570
      WBInteraction000107576
      WBInteraction000107583
      WBInteraction000107602
      WBInteraction000107609
      WBInteraction000107624
      WBInteraction000107635
      WBInteraction000107657
      WBInteraction000107669
      WBInteraction000107680
      WBInteraction000107687
      WBInteraction000107716
      WBInteraction000107729
      WBInteraction000107762
      WBInteraction000107799
      WBInteraction000107840
      WBInteraction000107865
      WBInteraction000107884
      WBInteraction000107902
      WBInteraction000107920
      WBInteraction000107946
      WBInteraction000107962
      WBInteraction000108005
      WBInteraction000108016
      WBInteraction000108027
      WBInteraction000108037
      WBInteraction000108065
      WBInteraction000108101
      WBInteraction000108125
      WBInteraction000108159
      WBInteraction000108201
      WBInteraction000108241
      WBInteraction000108283
      WBInteraction000108289
      WBInteraction000108290
      WBInteraction000108291
      WBInteraction000108292
      WBInteraction000108713
      WBInteraction000108721
      WBInteraction000108760
      WBInteraction000108777
      WBInteraction000115696
      WBInteraction000118241
      WBInteraction000119469
      WBInteraction000120068
      WBInteraction000120445
      WBInteraction000120937
      WBInteraction000121574
      WBInteraction000127982
      WBInteraction000128015
      WBInteraction000129443
      WBInteraction000129444
      WBInteraction000129445
      WBInteraction000129481
      WBInteraction000129506
      WBInteraction000129533
      WBInteraction000129563
      WBInteraction000129575
      WBInteraction000129584
      WBInteraction000129608
      WBInteraction000129632
      WBInteraction000129683
      WBInteraction000129709
      WBInteraction000129745
      WBInteraction000129791
      WBInteraction000129817
      WBInteraction000129833
      WBInteraction000129844
      WBInteraction000129894
      WBInteraction000129918
      WBInteraction000129934
      WBInteraction000129953
      WBInteraction000130017
      WBInteraction000130113
      WBInteraction000130628
      WBInteraction000132832
      WBInteraction000153718
      WBInteraction000153740
      WBInteraction000153760
      WBInteraction000153807
      WBInteraction000153843
      WBInteraction000153873
      WBInteraction000153911
      WBInteraction000153932
      WBInteraction000154019
      WBInteraction000154043
      WBInteraction000154066
      WBInteraction000154954
      WBInteraction000154955
      WBInteraction000155401
      WBInteraction000155633
      WBInteraction000155721
      WBInteraction000155771
      WBInteraction000156092
      WBInteraction000156281
      WBInteraction000156473
      WBInteraction000156479
      WBInteraction000156728
      WBInteraction000156729
      WBInteraction000180823
      WBInteraction000183923
      WBInteraction000183924
      WBInteraction000183925
      WBInteraction000183926
      WBInteraction000185680
      WBInteraction000185681
      WBInteraction000187756
      WBInteraction000192552
      WBInteraction000193783
      WBInteraction000208533
      WBInteraction000212950
      WBInteraction000235394
      WBInteraction000237434
      WBInteraction000240287
      WBInteraction000240288
      WBInteraction000240289
      WBInteraction000273715
      WBInteraction000296486
      WBInteraction000332535
      WBInteraction000335998
      WBInteraction000337627
      WBInteraction000343660
      WBInteraction000345639
      WBInteraction000368760
      WBInteraction000371727
      WBInteraction000412851
      WBInteraction000443904
      WBInteraction000448649
      WBInteraction000448652
      WBInteraction000450279
      WBInteraction000453618
      WBInteraction000463262
      WBInteraction000465159
      WBInteraction000467188
      WBInteraction000467345
      WBInteraction000467874
      WBInteraction000469000
      WBInteraction000469661
      WBInteraction000470985
      WBInteraction000474860
      WBInteraction000475432
      WBInteraction000475469
      WBInteraction000521810
      WBInteraction000539603
      WBInteraction000539613
      WBInteraction000542699
      WBInteraction000553853
      WBInteraction000554079
      WBInteraction000561781
      WBInteraction000562105
      WBInteraction000562752
      WBInteraction000563057
      WBInteraction000564228
      WBInteraction000565794
      WBInteraction000567659
      WBInteraction000569293
      WBInteraction000570863
      WBInteraction000571092
      WBInteraction000571108
      WBInteraction000572204
      WBInteraction000577428
      WBInteraction000577730
      WBInteraction000582696
      WBInteraction000584650
      WBInteraction000585271
  Map_info: Map: II Position: 22.4552 Error: 0.003479
    Positive: Positive_clone: Y48B6A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00025088
    WBPaper00028564
    WBPaper00038491
    WBPaper00045184
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene