WormBase Tree Display for Gene: WBGene00004453

WBGene00004453 SMap: S_parent: Sequence: C26F1
  Identity: Version: 1
    Name: CGC_name: rpl-39
      Sequence_name: C26F1.9
      Molecular_name: C26F1.9
        C26F1.9.1
        CE06883
      Other_name: 5I256 Accession_evidence: EMBL AF303271
        CELE_C26F1.9 Accession_evidence: NDB BX284605
      Public_name: rpl-39
    DB_info: Database: AceView gene 5I256
        WormQTL gene WBGene00004453
        WormFlux gene WBGene00004453
        NDB locus_tag CELE_C26F1.9
        Panther gene CAEEL|WormBase=WBGene00004453|UniProtKB=P52814
          family PTHR19970
        NCBI gene 179153
        RefSeq protein NM_001392549.1
        SwissProt UniProtAcc P52814
        TREEFAM TREEFAM_ID TF300223
        UniProt_GCRP UniProtAcc P52814
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (11)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl39 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00047874
      00047875
      00047876
      00112919
      00112920
      00112921
    Ortholog (21)
    Structured_description: Concise_description: rpl-39 encodes a large ribosomal subunit L39 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL39 (ribosomal protein L39) and RPL39P5 (ribosomal protein L39 pseudogene 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C26F1.9
    Corresponding_transcript: C26F1.9.1
    Other_sequence (448)
    Associated_feature: WBsf652791
      WBsf652792
      WBsf669132
      WBsf1019950
      WBsf233986
  Experimental_info: RNAi_result (10)
    Expr_pattern: Expr1016181
      Expr1032257
      Expr1145327
      Expr2015472
      Expr2033707
    Drives_construct: WBCnstr00035473
    Construct_product: WBCnstr00035473
    Microarray_results (17)
    Expression_cluster (128)
    Interaction: WBInteraction000041220
      WBInteraction000107491
      WBInteraction000107539
      WBInteraction000107714
      WBInteraction000107761
      WBInteraction000107838
      WBInteraction000108003
      WBInteraction000108199
      WBInteraction000108207
      WBInteraction000108208
      WBInteraction000108209
      WBInteraction000108210
      WBInteraction000108211
      WBInteraction000108212
      WBInteraction000108213
      WBInteraction000108214
      WBInteraction000108215
      WBInteraction000108216
      WBInteraction000108217
      WBInteraction000108218
      WBInteraction000108219
      WBInteraction000108220
      WBInteraction000108221
      WBInteraction000108222
      WBInteraction000108223
      WBInteraction000108224
      WBInteraction000108225
      WBInteraction000108226
      WBInteraction000108227
      WBInteraction000108228
      WBInteraction000108229
      WBInteraction000108230
      WBInteraction000108231
      WBInteraction000108232
      WBInteraction000108233
      WBInteraction000108234
      WBInteraction000108235
      WBInteraction000108236
      WBInteraction000108237
      WBInteraction000108238
      WBInteraction000108239
      WBInteraction000108240
      WBInteraction000108241
      WBInteraction000108242
      WBInteraction000108243
      WBInteraction000108244
      WBInteraction000108245
      WBInteraction000108246
      WBInteraction000108282
      WBInteraction000109038
      WBInteraction000110128
      WBInteraction000125267
      WBInteraction000127084
      WBInteraction000129388
      WBInteraction000129389
      WBInteraction000129390
      WBInteraction000129391
      WBInteraction000129392
      WBInteraction000129393
      WBInteraction000129394
      WBInteraction000129395
      WBInteraction000129396
      WBInteraction000129397
      WBInteraction000129398
      WBInteraction000129399
      WBInteraction000129400
      WBInteraction000129401
      WBInteraction000129402
      WBInteraction000129403
      WBInteraction000129404
      WBInteraction000129405
      WBInteraction000129406
      WBInteraction000129407
      WBInteraction000129408
      WBInteraction000129409
      WBInteraction000129410
      WBInteraction000129411
      WBInteraction000129412
      WBInteraction000129413
      WBInteraction000129414
      WBInteraction000129415
      WBInteraction000129416
      WBInteraction000129479
      WBInteraction000129562
      WBInteraction000129744
      WBInteraction000130056
      WBInteraction000130112
      WBInteraction000143567
      WBInteraction000143992
      WBInteraction000143996
      WBInteraction000144176
      WBInteraction000146539
      WBInteraction000149413
      WBInteraction000150326
      WBInteraction000153144
      WBInteraction000153805
      WBInteraction000154017
      WBInteraction000154917
      WBInteraction000154918
      WBInteraction000154919
      WBInteraction000154920
      WBInteraction000154921
      WBInteraction000154922
      WBInteraction000154923
      WBInteraction000154924
      WBInteraction000154925
      WBInteraction000154926
      WBInteraction000154927
      WBInteraction000154928
      WBInteraction000154929
      WBInteraction000154930
      WBInteraction000154931
      WBInteraction000154932
      WBInteraction000154933
      WBInteraction000154934
      WBInteraction000168971
      WBInteraction000171141
      WBInteraction000171741
      WBInteraction000174896
      WBInteraction000182336
      WBInteraction000185138
      WBInteraction000187613
      WBInteraction000189727
      WBInteraction000190508
      WBInteraction000191652
      WBInteraction000194485
      WBInteraction000195266
      WBInteraction000195381
      WBInteraction000204913
      WBInteraction000210653
      WBInteraction000215376
      WBInteraction000220128
      WBInteraction000223232
      WBInteraction000223828
      WBInteraction000234056
      WBInteraction000253997
      WBInteraction000254639
      WBInteraction000255757
      WBInteraction000258603
      WBInteraction000270672
      WBInteraction000273430
      WBInteraction000281127
      WBInteraction000296946
      WBInteraction000298480
      WBInteraction000302680
      WBInteraction000303047
      WBInteraction000304801
      WBInteraction000309525
      WBInteraction000310544
      WBInteraction000317184
      WBInteraction000326404
      WBInteraction000330842
      WBInteraction000342827
      WBInteraction000345661
      WBInteraction000345924
      WBInteraction000346292
      WBInteraction000348505
      WBInteraction000351929
      WBInteraction000352262
      WBInteraction000354677
      WBInteraction000355123
      WBInteraction000361072
      WBInteraction000361878
      WBInteraction000367236
      WBInteraction000371839
      WBInteraction000388788
      WBInteraction000398674
      WBInteraction000402272
      WBInteraction000404839
      WBInteraction000404868
      WBInteraction000404869
      WBInteraction000404870
      WBInteraction000404871
      WBInteraction000410751
      WBInteraction000415195
      WBInteraction000416598
      WBInteraction000418260
      WBInteraction000420105
      WBInteraction000423360
      WBInteraction000427843
      WBInteraction000429898
      WBInteraction000431872
      WBInteraction000432899
      WBInteraction000432993
      WBInteraction000433045
      WBInteraction000435788
      WBInteraction000438948
      WBInteraction000447953
      WBInteraction000452248
      WBInteraction000464595
      WBInteraction000554234
      WBInteraction000560878
      WBInteraction000561996
      WBInteraction000569383
      WBInteraction000571877
      WBInteraction000575743
      WBInteraction000576601
      WBInteraction000582732
  Map_info: Map: V Position: 0.888062
    Positive: Positive_clone: C26F1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (0.88)
  Method: Gene