WormBase Tree Display for Gene: WBGene00003612
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| WBGene00003612 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y5H2B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-13 | Person_evidence | WBPerson600 | |||||
| Sequence_name | Y5H2B.2 | ||||||||
| Molecular_name | Y5H2B.2a | ||||||||
| Y5H2B.2a.1 | |||||||||
| CE26221 | |||||||||
| Y5H2B.2b | |||||||||
| CE36963 | |||||||||
| Y5H2B.2b.1 | |||||||||
| Other_name | Y5H2B.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y5H2B.h | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y5H2B.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-13 | ||||||||
| DB_info | Database | AceView | gene | 5C673 | |||||
| WormQTL | gene | WBGene00003612 | |||||||
| WormFlux | gene | WBGene00003612 | |||||||
| NDB | locus_tag | CELE_Y5H2B.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003612|UniProtKB=Q9N4Q7 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 178696 | |||||||
| RefSeq | protein | NM_001029098.6 | |||||||
| NM_001029097.6 | |||||||||
| SwissProt | UniProtAcc | Q9N4Q7 | |||||||
| TREEFAM | TREEFAM_ID | TF321941 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N4Q7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (84) | |||||||||
| Legacy_information | NMK. Nuclear hormone receptor superfamily. [AE] | ||||||||
| [C.elegansII] NMK. Nuclear hormone receptor superfamily. YAC Y50H8 etc. [AE] | |||||||||
| Strain | WBStrain00034507 | ||||||||
| WBStrain00034509 | |||||||||
| WBStrain00036771 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Concise_description | nhr-13 encodes a member of the nuclear hormone receptor family. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 16 Feb 2005 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y5H2B.2a | |||||||
| Y5H2B.2b | |||||||||
| Corresponding_CDS_history | Y5H2B.2:wp126 | ||||||||
| Corresponding_transcript | Y5H2B.2a.1 | ||||||||
| Y5H2B.2b.1 | |||||||||
| Other_sequence | CRC03067_1 | ||||||||
| CRC10192_1 | |||||||||
| CBC15711_1 | |||||||||
| CR03762 | |||||||||
| CJC17452_1 | |||||||||
| CR04047 | |||||||||
| CBC12541_1 | |||||||||
| Associated_feature | WBsf646695 | ||||||||
| WBsf978803 | |||||||||
| WBsf1019267 | |||||||||
| WBsf1019268 | |||||||||
| WBsf231482 | |||||||||
| WBsf231483 | |||||||||
| WBsf231484 | |||||||||
| Transcription_factor | WBTranscriptionFactor000349 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057796 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037649 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021194 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7733 | ||||||||
| Expr1022731 | |||||||||
| Expr1031659 | |||||||||
| Expr1161228 | |||||||||
| Expr2014040 | |||||||||
| Expr2032280 | |||||||||
| Drives_construct | WBCnstr00012878 | ||||||||
| WBCnstr00036001 | |||||||||
| Construct_product | WBCnstr00036001 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction | WBInteraction000030494 | ||||||||
| WBInteraction000030587 | |||||||||
| WBInteraction000031351 | |||||||||
| WBInteraction000384251 | |||||||||
| WBInteraction000507504 | |||||||||
| WBInteraction000507506 | |||||||||
| WBInteraction000507511 | |||||||||
| WBInteraction000507513 | |||||||||
| WBInteraction000509694 | |||||||||
| WBInteraction000509698 | |||||||||
| WBInteraction000509700 | |||||||||
| WBInteraction000509701 | |||||||||
| WBInteraction000509702 | |||||||||
| WBInteraction000509709 | |||||||||
| WBInteraction000509722 | |||||||||
| WBInteraction000509728 | |||||||||
| WBInteraction000509729 | |||||||||
| WBInteraction000513444 | |||||||||
| WBInteraction000514035 | |||||||||
| WBInteraction000514037 | |||||||||
| WBInteraction000514151 | |||||||||
| WBInteraction000514158 | |||||||||
| WBInteraction000514159 | |||||||||
| WBInteraction000514160 | |||||||||
| WBInteraction000514161 | |||||||||
| WBInteraction000514162 | |||||||||
| WBInteraction000521549 | |||||||||
| WBInteraction000526816 | |||||||||
| WBInteraction000530013 | |||||||||
| WBInteraction000539483 | |||||||||
| WBInteraction000548432 | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | V | Position | -15.5307 | Error | 0.009682 | |||
| Positive | Positive_clone | cm9g2 | |||||||
| Y5E4 | Person_evidence | WBPerson600 | |||||||
| Y5H2B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Y50H8 | Person_evidence | WBPerson600 | |||||||
| Y52H2 | Person_evidence | WBPerson600 | |||||||
| Y54G1 | Person_evidence | WBPerson600 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00034500 | |||||||||
| WBPaper00040998 | |||||||||
| WBPaper00048196 | |||||||||
| WBPaper00061653 | |||||||||
| Picture | WBPicture0000013097 | ||||||||
| Remark | Map V Position -14.960000 | ||||||||
| cm9g2 matches genomic sequence Y5H2B.2, but nhr-18 is on this Yac as well. sdm 1/12/00 | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
