WormBase Tree Display for Gene: WBGene00008683

WBGene00008683 SMap: S_parent: Sequence: F11A10
  Identity: Version: 2
    Name: CGC_name: repo-1 Person_evidence: WBPerson75
            WBPerson3760
      Sequence_name: F11A10.2
      Molecular_name: F11A10.2
        F11A10.2.1
        CE28910
      Other_name: CELE_F11A10.2 Accession_evidence: NDB BX284604
      Public_name: repo-1
    DB_info: Database: AceView gene 4M849
        WormQTL gene WBGene00008683
        WormFlux gene WBGene00008683
        NDB locus_tag CELE_F11A10.2
        Panther gene CAEEL|WormBase=WBGene00008683|UniProtKB=Q19335
          family PTHR23205
        NCBI gene 178147
        RefSeq protein NM_069889.7
        TREEFAM TREEFAM_ID TF314370
        TrEMBL UniProtAcc Q19335
        UniProt_GCRP UniProtAcc Q19335
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Jun 2010 11:37:34 WBPerson2970 Name_change: CGC_name: repo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: repo
    Allele (14)
    Strain: WBStrain00001603
      WBStrain00007341
      WBStrain00007395
      WBStrain00034994
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP4488
    Ortholog (33)
    Structured_description: Automated_description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Expressed in head. Is an ortholog of human SF3A2 (splicing factor 3a subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F11A10.2
    Corresponding_CDS_history: F11A10.2:wp60
    Corresponding_transcript: F11A10.2.1
    Other_sequence (61)
    Associated_feature: WBsf978613
      WBsf229246
    Transcription_factor: WBTranscriptionFactor001133
  Experimental_info: RNAi_result: WBRNAi00080038 Inferred_automatically: RNAi_primary
      WBRNAi00106648 Inferred_automatically: RNAi_primary
      WBRNAi00083638 Inferred_automatically: RNAi_primary
      WBRNAi00083823 Inferred_automatically: RNAi_primary
      WBRNAi00092042 Inferred_automatically: RNAi_primary
      WBRNAi00080126 Inferred_automatically: RNAi_primary
      WBRNAi00083736 Inferred_automatically: RNAi_primary
      WBRNAi00071479 Inferred_automatically: RNAi_primary
      WBRNAi00094503 Inferred_automatically: RNAi_primary
      WBRNAi00106746 Inferred_automatically: RNAi_primary
      WBRNAi00075238 Inferred_automatically: RNAi_primary
      WBRNAi00025075 Inferred_automatically: RNAi_primary
      WBRNAi00082394 Inferred_automatically: RNAi_primary
      WBRNAi00081141 Inferred_automatically: RNAi_primary
      WBRNAi00094523 Inferred_automatically: RNAi_primary
      WBRNAi00008196 Inferred_automatically: RNAi_primary
      WBRNAi00044336 Inferred_automatically: RNAi_primary
      WBRNAi00094261 Inferred_automatically: RNAi_primary
      WBRNAi00094099 Inferred_automatically: RNAi_primary
      WBRNAi00075239 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr5729
      Expr1014253
      Expr1033780
      Expr1148272
      Expr1200279
      Expr2015298
      Expr2033532
    Drives_construct: WBCnstr00002442
      WBCnstr00032773
    Construct_product: WBCnstr00032773
      WBCnstr00038825
    Microarray_results (18)
    Expression_cluster (105)
    SAGE_tag: SAGE:aaatacggatccttttg Strand: Antisense
      SAGE:aaatacggat Strand: Antisense
      SAGE:cgaaatcaca Strand: Sense
        Unambiguously_mapped
      SAGE:cgaaatcacattggaac Strand: Sense
        Unambiguously_mapped
    Interaction: WBInteraction000009385
      WBInteraction000034093
      WBInteraction000034560
      WBInteraction000035948
      WBInteraction000035986
      WBInteraction000036411
      WBInteraction000036419
      WBInteraction000036517
      WBInteraction000036615
      WBInteraction000036794
      WBInteraction000036797
      WBInteraction000037215
      WBInteraction000037905
      WBInteraction000038702
      WBInteraction000039634
      WBInteraction000039694
      WBInteraction000039937
      WBInteraction000040322
      WBInteraction000040431
      WBInteraction000040445
      WBInteraction000040446
      WBInteraction000040516
      WBInteraction000040523
      WBInteraction000040524
      WBInteraction000040726
      WBInteraction000040742
      WBInteraction000041485
      WBInteraction000041558
      WBInteraction000041560
      WBInteraction000041566
      WBInteraction000041569
      WBInteraction000041570
      WBInteraction000041571
      WBInteraction000041574
      WBInteraction000041576
      WBInteraction000041582
      WBInteraction000041583
      WBInteraction000041584
      WBInteraction000041585
      WBInteraction000041675
      WBInteraction000042140
      WBInteraction000043155
      WBInteraction000044518
      WBInteraction000046148
      WBInteraction000046168
      WBInteraction000046300
      WBInteraction000047660
      WBInteraction000047986
      WBInteraction000048664
      WBInteraction000048665
      WBInteraction000048666
      WBInteraction000048667
      WBInteraction000048867
      WBInteraction000048875
      WBInteraction000048876
      WBInteraction000050152
      WBInteraction000050153
      WBInteraction000102649
      WBInteraction000102723
      WBInteraction000103318
      WBInteraction000109622
      WBInteraction000122403
      WBInteraction000122477
      WBInteraction000124027
      WBInteraction000125452
      WBInteraction000125460
      WBInteraction000125461
      WBInteraction000125462
      WBInteraction000125463
      WBInteraction000125464
      WBInteraction000125465
      WBInteraction000125466
      WBInteraction000125467
      WBInteraction000125468
      WBInteraction000125598
      WBInteraction000128680
      WBInteraction000128798
      WBInteraction000130161
      WBInteraction000130206
      WBInteraction000130667
      WBInteraction000130760
      WBInteraction000130909
      WBInteraction000131054
      WBInteraction000131128
      WBInteraction000131129
      WBInteraction000131130
      WBInteraction000131131
      WBInteraction000131132
      WBInteraction000131133
      WBInteraction000131134
      WBInteraction000131135
      WBInteraction000131136
      WBInteraction000131137
      WBInteraction000131138
      WBInteraction000131139
      WBInteraction000131140
      WBInteraction000131141
      WBInteraction000131142
      WBInteraction000131143
      WBInteraction000131144
      WBInteraction000131145
      WBInteraction000131146
      WBInteraction000131147
      WBInteraction000131148
      WBInteraction000131149
      WBInteraction000131150
      WBInteraction000131151
      WBInteraction000131152
      WBInteraction000131153
      WBInteraction000131154
      WBInteraction000131155
      WBInteraction000131156
      WBInteraction000131157
      WBInteraction000131158
      WBInteraction000131159
      WBInteraction000131160
      WBInteraction000131161
      WBInteraction000131162
      WBInteraction000131163
      WBInteraction000131164
      WBInteraction000131165
      WBInteraction000131166
      WBInteraction000131167
      WBInteraction000131168
      WBInteraction000131169
      WBInteraction000131170
      WBInteraction000131171
      WBInteraction000131882
      WBInteraction000131992
      WBInteraction000132051
      WBInteraction000132157
      WBInteraction000132219
      WBInteraction000133041
      WBInteraction000144976
      WBInteraction000145087
      WBInteraction000145089
      WBInteraction000159104
      WBInteraction000159105
      WBInteraction000159106
      WBInteraction000159107
      WBInteraction000183114
      WBInteraction000185369
      WBInteraction000188788
      WBInteraction000189702
      WBInteraction000201840
      WBInteraction000212366
      WBInteraction000214837
      WBInteraction000221384
      WBInteraction000243562
      WBInteraction000244255
      WBInteraction000245714
      WBInteraction000281538
      WBInteraction000300766
      WBInteraction000301174
      WBInteraction000302049
      WBInteraction000302898
      WBInteraction000312579
      WBInteraction000313615
      WBInteraction000323283
      WBInteraction000326351
      WBInteraction000342543
      WBInteraction000352587
      WBInteraction000355013
      WBInteraction000359595
      WBInteraction000365206
      WBInteraction000365927
      WBInteraction000367949
      WBInteraction000370222
      WBInteraction000393325
      WBInteraction000395394
      WBInteraction000397549
      WBInteraction000406179
      WBInteraction000409223
      WBInteraction000409224
      WBInteraction000414795
      WBInteraction000428999
      WBInteraction000437988
      WBInteraction000458232
      WBInteraction000462772
      WBInteraction000469530
      WBInteraction000473031
      WBInteraction000514070
      WBInteraction000516094
      WBInteraction000519922
      WBInteraction000522902
      WBInteraction000523289
      WBInteraction000526313
      WBInteraction000527950
      WBInteraction000528107
      WBInteraction000539066
      WBInteraction000566839
      WBInteraction000568380
      WBInteraction000568761
      WBInteraction000570480
      WBInteraction000580607
      WBInteraction000582149
  Map_info: Map: IV Position: 5.67389 Error: 0.00321
    Positive: Positive_clone: F11A10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00019463
    WBPaper00034662
    WBPaper00036803
    WBPaper00038491
    WBPaper00039463
    WBPaper00048493
    WBPaper00051598
    WBPaper00055090
    WBPaper00064415
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene