WormBase Tree Display for Gene: WBGene00003079

WBGene00003079 Evidence: Person_evidence: WBPerson1846
  SMap: S_parent: Sequence: F28F8
  Identity: Version: 1
    Name: CGC_name: lsm-5
      Sequence_name: F28F8.3
      Molecular_name: F28F8.3
        F28F8.3.1
        CE09757
      Other_name: CELE_F28F8.3 Accession_evidence: NDB BX284605
      Public_name: lsm-5
    DB_info: Database: AceView gene 5Q49
        WormQTL gene WBGene00003079
        WormFlux gene WBGene00003079
        NDB locus_tag CELE_F28F8.3
        Panther gene CAEEL|WormBase=WBGene00003079|UniProtKB=O18694
          family PTHR20971
        NCBI gene 180047
        RefSeq protein NM_001380830.1
        TREEFAM TREEFAM_ID TF313575
        TrEMBL UniProtAcc O18694
        UniProt_GCRP UniProtAcc O18694
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lsm
    Allele (12)
    Strain: WBStrain00037485
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (35)
    Structured_description: Automated_description: Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Lsm1-7-Pat1 complex; U4/U6 x U5 tri-snRNP complex; and U6 snRNP. Is an ortholog of human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28F8.3
    Corresponding_transcript: F28F8.3.1
    Other_sequence (60)
    Associated_feature: WBsf647601
  Experimental_info: RNAi_result: WBRNAi00014061 Inferred_automatically: RNAi_primary
      WBRNAi00117295 Inferred_automatically: RNAi_primary
      WBRNAi00045849 Inferred_automatically: RNAi_primary
      WBRNAi00083680 Inferred_automatically: RNAi_primary
      WBRNAi00083575 Inferred_automatically: RNAi_primary
      WBRNAi00061511 Inferred_automatically: RNAi_primary
      WBRNAi00083770 Inferred_automatically: RNAi_primary
      WBRNAi00031534 Inferred_automatically: RNAi_primary
      WBRNAi00117285 Inferred_automatically: RNAi_primary
      WBRNAi00083522 Inferred_automatically: RNAi_primary
      WBRNAi00083489 Inferred_automatically: RNAi_primary
      WBRNAi00117306 Inferred_automatically: RNAi_primary
      WBRNAi00085620 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1010827
      Expr1031454
      Expr1149754
      Expr2013292
      Expr2031523
    Microarray_results (23)
    Expression_cluster (121)
    SAGE_tag: SAGE:ttcacgtagt Strand: Antisense
      SAGE:gttctggaggacgtcgt Strand: Sense
        Unambiguously_mapped
      SAGE:gttctggagg Strand: Sense
        Unambiguously_mapped
      SAGE:ttcacgtagtcatcgaa Strand: Antisense
    Interaction: WBInteraction000032794
      WBInteraction000032795
      WBInteraction000032989
      WBInteraction000033449
      WBInteraction000035258
      WBInteraction000036256
      WBInteraction000036928
      WBInteraction000038427
      WBInteraction000038428
      WBInteraction000038696
      WBInteraction000039099
      WBInteraction000039100
      WBInteraction000040490
      WBInteraction000040491
      WBInteraction000040492
      WBInteraction000040493
      WBInteraction000041281
      WBInteraction000041560
      WBInteraction000041561
      WBInteraction000041562
      WBInteraction000041563
      WBInteraction000041744
      WBInteraction000042625
      WBInteraction000044516
      WBInteraction000045547
      WBInteraction000048854
      WBInteraction000049747
      WBInteraction000050119
      WBInteraction000050120
      WBInteraction000050121
      WBInteraction000050122
      WBInteraction000050123
      WBInteraction000050519
      WBInteraction000050520
      WBInteraction000051873
      WBInteraction000051906
      WBInteraction000101431
      WBInteraction000101462
      WBInteraction000101661
      WBInteraction000101961
      WBInteraction000102228
      WBInteraction000102352
      WBInteraction000103495
      WBInteraction000106050
      WBInteraction000106052
      WBInteraction000110463
      WBInteraction000110566
      WBInteraction000110699
      WBInteraction000110738
      WBInteraction000110788
      WBInteraction000110855
      WBInteraction000110891
      WBInteraction000110940
      WBInteraction000111014
      WBInteraction000111412
      WBInteraction000112707
      WBInteraction000118464
      WBInteraction000118465
      WBInteraction000119203
      WBInteraction000119304
      WBInteraction000119491
      WBInteraction000119595
      WBInteraction000119856
      WBInteraction000119910
      WBInteraction000121292
      WBInteraction000121368
      WBInteraction000121369
      WBInteraction000124727
      WBInteraction000125620
      WBInteraction000125857
      WBInteraction000126804
      WBInteraction000126805
      WBInteraction000134841
      WBInteraction000135329
      WBInteraction000136515
      WBInteraction000136516
      WBInteraction000137219
      WBInteraction000137483
      WBInteraction000140391
      WBInteraction000140392
      WBInteraction000141727
      WBInteraction000144451
      WBInteraction000148995
      WBInteraction000150032
      WBInteraction000151803
      WBInteraction000162992
      WBInteraction000165108
      WBInteraction000167361
      WBInteraction000182754
      WBInteraction000183140
      WBInteraction000186128
      WBInteraction000191445
      WBInteraction000191486
      WBInteraction000199941
      WBInteraction000200490
      WBInteraction000203511
      WBInteraction000203904
      WBInteraction000211151
      WBInteraction000212989
      WBInteraction000212990
      WBInteraction000221306
      WBInteraction000223253
      WBInteraction000226385
      WBInteraction000229004
      WBInteraction000229005
      WBInteraction000230372
      WBInteraction000233261
      WBInteraction000244163
      WBInteraction000296295
      WBInteraction000301913
      WBInteraction000312728
      WBInteraction000314870
      WBInteraction000321255
      WBInteraction000322968
      WBInteraction000328275
      WBInteraction000330349
      WBInteraction000330350
      WBInteraction000333640
      WBInteraction000339299
      WBInteraction000339300
      WBInteraction000339301
      WBInteraction000341502
      WBInteraction000343791
      WBInteraction000343792
      WBInteraction000347360
      WBInteraction000347361
      WBInteraction000349715
      WBInteraction000350954
      WBInteraction000350955
      WBInteraction000352145
      WBInteraction000353348
      WBInteraction000353349
      WBInteraction000362712
      WBInteraction000366181
      WBInteraction000371440
      WBInteraction000371441
      WBInteraction000374074
      WBInteraction000374075
      WBInteraction000374076
      WBInteraction000376717
      WBInteraction000376718
      WBInteraction000380739
      WBInteraction000380740
      WBInteraction000385627
      WBInteraction000385628
      WBInteraction000385660
      WBInteraction000389028
      WBInteraction000390430
      WBInteraction000390466
      WBInteraction000396277
      WBInteraction000397832
      WBInteraction000397833
      WBInteraction000397834
      WBInteraction000400714
      WBInteraction000400715
      WBInteraction000400716
      WBInteraction000402194
      WBInteraction000402195
      WBInteraction000405321
      WBInteraction000405322
      WBInteraction000408438
      WBInteraction000408439
      WBInteraction000409054
      WBInteraction000409948
      WBInteraction000413133
      WBInteraction000418046
      WBInteraction000418047
      WBInteraction000422955
      WBInteraction000428784
      WBInteraction000430852
      WBInteraction000431364
      WBInteraction000431412
      WBInteraction000434872
      WBInteraction000434873
      WBInteraction000436627
      WBInteraction000436628
      WBInteraction000436629
      WBInteraction000440111
      WBInteraction000440112
      WBInteraction000440113
      WBInteraction000441910
      WBInteraction000449178
      WBInteraction000449179
      WBInteraction000450992
      WBInteraction000454044
      WBInteraction000458699
      WBInteraction000460509
      WBInteraction000460510
      WBInteraction000462452
      WBInteraction000462898
      WBInteraction000462899
      WBInteraction000462900
      WBInteraction000462901
      WBInteraction000462902
      WBInteraction000463179
      WBInteraction000463585
      WBInteraction000464260
      WBInteraction000464799
      WBInteraction000464800
      WBInteraction000465070
      WBInteraction000465645
      WBInteraction000465646
      WBInteraction000465647
      WBInteraction000465927
      WBInteraction000465928
      WBInteraction000466940
      WBInteraction000466941
      WBInteraction000466942
      WBInteraction000467184
      WBInteraction000467185
      WBInteraction000467715
      WBInteraction000467716
      WBInteraction000467717
      WBInteraction000467718
      WBInteraction000469171
      WBInteraction000469998
      WBInteraction000470947
      WBInteraction000470948
      WBInteraction000471249
      WBInteraction000471250
      WBInteraction000471699
      WBInteraction000471918
      WBInteraction000471919
      WBInteraction000471920
      WBInteraction000472252
      WBInteraction000472888
      WBInteraction000473565
      WBInteraction000473566
      WBInteraction000473960
      WBInteraction000473961
      WBInteraction000474983
      WBInteraction000539126
      WBInteraction000547932
      WBInteraction000547933
      WBInteraction000555544
  Map_info: Map: V Position: 8.36658 Error: 0.003911
    Positive: Positive_clone: F28F8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028564
    WBPaper00038491
    WBPaper00046572
    WBPaper00055090
    WBPaper00059378
    WBPaper00059527
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene