WormBase Tree Display for Gene: WBGene00022855

WBGene00022855 SMap: S_parent: Sequence: ZK1127
  Identity: Version: 3
    Name: CGC_name: tcer-1 Person_evidence: WBPerson2819
            WBPerson1157
      Sequence_name: ZK1127.9
      Molecular_name (15)
      Other_name: gos-1 Person_evidence: WBPerson2819
        CELE_ZK1127.9 Accession_evidence: NDB BX284602
      Public_name: tcer-1
    DB_info: Database: AceView gene 2H336C
            2H336
        WormQTL gene WBGene00022855
        WormFlux gene WBGene00022855
        NDB locus_tag CELE_ZK1127.9
        Panther gene CAEEL|WormBase=WBGene00022855|UniProtKB=Q95PX7
          family PTHR15377
        NCBI gene 174150
        RefSeq protein NM_001393112.1
            NM_001381486.2
            NM_001393111.1
            NM_001383878.2
        TREEFAM TREEFAM_ID TF317748
        TrEMBL UniProtAcc Q95PX9
            Q86MN9
            Q95PX8
            Q95PX7
        UniProt_GCRP UniProtAcc Q95PX7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:06 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Sep 2009 13:39:27 WBPerson9133 Name_change: CGC_name: tcer-1
        3 09 Oct 2017 09:36:16 WBPerson2970 Name_change: Other_name: gos-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tcer
    Allele (47)
    Strain: WBStrain00004897
      WBStrain00004899
    RNASeq_FPKM (74)
    GO_annotation: 00083443
      00083444
      00083445
      00087975
      00087976
      00126826
    Ortholog (39)
    Paralog: WBGene00022853 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Located in nuclear periphery. Expressed in several structures, including germ cell; gonad; hypodermal cell; intestinal cell; and somatic cell. Is an ortholog of human TCERG1 (transcription elongation regulator 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1127.9a
      ZK1127.9b
      ZK1127.9c
      ZK1127.9d
    Corresponding_CDS_history: ZK1127.9e:wp274
    Corresponding_transcript: ZK1127.9a.1
      ZK1127.9b.1
      ZK1127.9c.1
      ZK1127.9c.2
      ZK1127.9c.3
      ZK1127.9c.4
      ZK1127.9d.1
    Other_sequence: Oden_isotig18760
      Dviv_isotig12583
      Tcol_isotig06779
      GW407306.1
      HBC20188_1
      CJC10605_1
      BXC01622_1
      AI053014.1
      PVC02182_1
      BXC03543_1
      CBC01593_1
      CRC04206_1
      CR02139
      PP02168
      EX541721.1
      JO470594.1
      FC539405.1
      JI164469.1
      JI475056.1
      DAC01333_1
      OVC00953_1
      Hbac_isotig01087
      AYC03026_1
      CBC14869_1
      EL889456.1
      AA294076.1
      Tcol_isotig06777
      BE225424.1
      MI03037
      EY463818.1
      Dviv_isotig12585
      DA00332
      JI213279.1
      MIC02565_1
      EX561855.1
      HGC11946_1
      BMC08127_1
      HG04998
      FC552091.1
      FC539523.1
      Tcol_isotig06778
      PSC03749_1
      FC546365.1
      Dviv_isotig12584
      EX560191.1
      ACC21628_1
      CGC00128_1
      JI176044.1
      FC541247.1
      BUC01932_1
      Acan_isotig06362
      ES741845.1
      AE04108
      EX540883.1
      Tcol_isotig06780
      CR02893
      CGC00766_1
      ACC02978_1
      CRC09757_1
      PPC01188_1
      GT571206.1
    Associated_feature: WBsf650203
      WBsf223279
  Experimental_info: RNAi_result (33)
    Expr_pattern: Expr7190
      Expr10747
      Expr12818
      Expr1040111
      Expr1162561
      Expr2017362
      Expr2035499
    Drives_construct (11)
    Construct_product (12)
    Regulate_expr_cluster: WBPaper00049217:TCER-1_downregulated
      WBPaper00049217:TCER-1_upregulated
    Antibody: WBAntibody00001520
    Microarray_results (21)
    Expression_cluster (92)
    Interaction: WBInteraction000051891
      WBInteraction000166762
      WBInteraction000166988
      WBInteraction000167269
      WBInteraction000167276
      WBInteraction000167282
      WBInteraction000167473
      WBInteraction000167528
      WBInteraction000167530
      WBInteraction000167644
      WBInteraction000167763
      WBInteraction000167765
      WBInteraction000167783
      WBInteraction000167878
      WBInteraction000208322
      WBInteraction000218534
      WBInteraction000233057
      WBInteraction000233090
      WBInteraction000233154
      WBInteraction000238665
      WBInteraction000260684
      WBInteraction000270248
      WBInteraction000281176
      WBInteraction000331549
      WBInteraction000361630
      WBInteraction000379079
      WBInteraction000409908
      WBInteraction000421743
      WBInteraction000459025
      WBInteraction000519568
      WBInteraction000547732
      WBInteraction000547749
      WBInteraction000548603
      WBInteraction000548845
      WBInteraction000551317
      WBInteraction000551318
      WBInteraction000553327
      WBInteraction000568954
      WBInteraction000575486
      WBInteraction000582303
  Map_info: Map: II Position: 0.349925 Error: 0.00503
    Positive: Positive_clone: ZK1127 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (28)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene