WormBase Tree Display for Gene: WBGene00020886

WBGene00020886 SMap: S_parent: Sequence: T28B4
  Identity: Version: 2
    Name: CGC_name: ttr-6
      Sequence_name: T28B4.3
      Molecular_name: T28B4.3
        T28B4.3.1
        CE14325
      Other_name: CELE_T28B4.3 Accession_evidence: NDB BX284606
      Public_name: ttr-6
    DB_info: Database: AceView gene XH214
        WormQTL gene WBGene00020886
        WormFlux gene WBGene00020886
        NDB locus_tag CELE_T28B4.3
        Panther gene CAEEL|WormBase=WBGene00020886|UniProtKB=O17345
          family PTHR21700
        NCBI gene 189028
        RefSeq protein NM_076709.6
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc O17345
        UniProt_GCRP UniProtAcc O17345
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (13)
    RNASeq_FPKM (74)
    GO_annotation: 00029646
      00029647
      00125408
    Ortholog (25)
    Paralog (62)
    Structured_description: Automated_description: Located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28B4.3
    Corresponding_transcript: T28B4.3.1
    Other_sequence: NBC01621_1
      Name_isotig03410
      Oden_contig03843
      PT03903
      Oden_isotig02151
      GPC00436_1
      MHC08302_1
      BM174776.1
      RS06377
      MC02894
      CBC09120_1
      TDC02980_1
      BMC01088_1
      HG03295
      WBC01153_1
      TCC02052_1
      GW411785.1
      NBC01583_1
      NBC04085_1
      AM743309.1
      NB07757
      ACC01016_1
      Hbac_isotig06843
      AF159590.1
      GW409071.1
      PTC03276_1
      Acan_isotig16186
      NBC08049_1
      OOC03459_1
      HBC01899_1
      GW406246.1
      NBC02307_1
      JI473846.1
      BMC15701_1
      GW409769.1
      GR367616.1
      NBC05032_1
      Oden_isotig23171
      NBC01161_1
      GR18175
      NBC07329_1
      NBC01065_1
      GR11682
      NB08584
      CD455666.1
      BM277418.1
      GRC00023_1
      NBC01223_1
      MCC02188_1
      Oden_isotig02149
      SSC05322_1
      ASC00204_1
      NBC02729_1
      SS00694
      Tcol_isotig16106
      NB07384
      Tcol_isotig02067
      Oden_isotig02152
      JK314918.1
      JI475517.1
      ES741401.1
      NBC09543_1
      PSC00327
      RSC00773_1
      HCC02831_1
      GW407457.1
      MH01283
      Oden_isotig02154
      JI211231.1
      GR18174
      HC04381
      JI234081.1
      Name_isotig05948
      Oden_isotig02153
      TX01728
      Dviv_isotig21928
      JI175613.1
      Oden_isotig02150
      HGC06081_1
      JI475235.1
      NBC01873_1
      HG11682
      NBC04814_1
      BXC03350_1
      HGC00248_1
      JI484148.1
      CJC00816_1
      HGC02415_1
      GW412682.1
      JI225770.1
      SSC04218_1
      AS08527
      TMC00972_1
      GP00914
      AM743378.1
      AI130601.1
      NB06410
      Tcol_isotig02066
      Dviv_isotig21929
    Associated_feature (2)
  Experimental_info: RNAi_result: WBRNAi00054380 Inferred_automatically: RNAi_primary
      WBRNAi00081190 Inferred_automatically: RNAi_primary
      WBRNAi00036069 Inferred_automatically: RNAi_primary
      WBRNAi00019381 Inferred_automatically: RNAi_primary
      WBRNAi00081194 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9506
      Expr1016353
      Expr1039100
      Expr1157928
      Expr2017625
      Expr2035765
    Drives_construct: WBCnstr00024811
    Construct_product: WBCnstr00014071
      WBCnstr00024811
    Microarray_results (19)
    Expression_cluster (224)
    Interaction: WBInteraction000182593
      WBInteraction000204123
      WBInteraction000204875
      WBInteraction000204907
      WBInteraction000206047
      WBInteraction000224478
      WBInteraction000240064
      WBInteraction000254626
      WBInteraction000255356
      WBInteraction000260195
      WBInteraction000287049
      WBInteraction000299967
      WBInteraction000304059
      WBInteraction000324342
      WBInteraction000329654
      WBInteraction000343716
      WBInteraction000361973
      WBInteraction000364413
      WBInteraction000364437
      WBInteraction000375705
      WBInteraction000382074
      WBInteraction000390903
      WBInteraction000394161
      WBInteraction000394484
      WBInteraction000417340
      WBInteraction000424560
      WBInteraction000444262
      WBInteraction000449226
  Map_info: Map: X Position: -2.751
    Positive: Positive_clone: T28B4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034662
    WBPaper00038444
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene