WormBase Tree Display for Gene: WBGene00007616

WBGene00007616 SMap: S_parent: Sequence: C15H11
  Identity: Version: 2
    Name: CGC_name: rpoa-12 Person_evidence: WBPerson10054
      Sequence_name: C15H11.8
      Molecular_name: C15H11.8
        C15H11.8.1
        CE08185
      Other_name: CELE_C15H11.8 Accession_evidence: NDB BX284605
      Public_name: rpoa-12
    DB_info: Database: AceView gene 5O904
        WormQTL gene WBGene00007616
        WormFlux gene WBGene00007616
        NDB locus_tag CELE_C15H11.8
        Panther gene CAEEL|WormBase=WBGene00007616|UniProtKB=O17587
          family PTHR11239
        NCBI gene 182648
        RefSeq protein NM_074171.7
        TREEFAM TREEFAM_ID TF313881
        TrEMBL UniProtAcc O17587
        UniProt_GCRP UniProtAcc O17587
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 28 Sep 2012 14:29:00 WBPerson2970 Name_change: CGC_name: rpoa-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpoa
    Allele (17)
    Strain: WBStrain00035908
      WBStrain00036322
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP5416
    Ortholog (35)
    Paralog: WBGene00022400 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022309 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA-directed 5'-3' RNA polymerase activity; nucleic acid binding activity; and zinc ion binding activity. Predicted to contribute to RNA polymerase I activity. Predicted to be involved in termination of RNA polymerase I transcription. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase I complex. Is an ortholog of human POLR1H (RNA polymerase I subunit H). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C15H11.8
    Corresponding_transcript: C15H11.8.1
    Other_sequence: BU087846.1
      Oden_isotig26448
      PSC02024_1
      MCC05632_1
      ES567598.1
      AW355782.1
      NAC01558_1
      OVC03637_1
      HBC24404_1
      Tcir_isotig09787
      TSC07424_1
      Acan_isotig16700
      HCC08142_1
      ES741362.1
      HC07487
      MJC00530_1
      CJC11373_1
      GW406613.1
      MC05077
      PPC07583_1
      Tcol_isotig23526
      MJ05172
      Dviv_isotig23766
      MJ01026
    Associated_feature: WBsf653384
    Transcription_factor: WBTranscriptionFactor000247
      WBTranscriptionFactor000586
  Experimental_info: RNAi_result (22)
    Expr_pattern: Expr1011165
      Expr1033284
      Expr1144681
      Expr2015498
      Expr2033733
    Microarray_results (21)
    Expression_cluster (122)
    Interaction: WBInteraction000037591
      WBInteraction000039583
      WBInteraction000040139
      WBInteraction000040140
      WBInteraction000040925
      WBInteraction000044527
      WBInteraction000044528
      WBInteraction000044529
      WBInteraction000046163
      WBInteraction000046164
      WBInteraction000046295
      WBInteraction000046296
      WBInteraction000101032
      WBInteraction000109140
      WBInteraction000110973
      WBInteraction000111409
      WBInteraction000124198
      WBInteraction000133439
      WBInteraction000134835
      WBInteraction000144140
      WBInteraction000148847
      WBInteraction000176782
      WBInteraction000177661
      WBInteraction000179592
      WBInteraction000183617
      WBInteraction000189551
      WBInteraction000195967
      WBInteraction000203794
      WBInteraction000204816
      WBInteraction000207854
      WBInteraction000210067
      WBInteraction000210876
      WBInteraction000213751
      WBInteraction000217050
      WBInteraction000225630
      WBInteraction000226128
      WBInteraction000231605
      WBInteraction000240760
      WBInteraction000245692
      WBInteraction000251337
      WBInteraction000253946
      WBInteraction000272964
      WBInteraction000278570
      WBInteraction000282050
      WBInteraction000284273
      WBInteraction000291499
      WBInteraction000295060
      WBInteraction000298861
      WBInteraction000302272
      WBInteraction000306152
      WBInteraction000306261
      WBInteraction000313246
      WBInteraction000314110
      WBInteraction000316039
      WBInteraction000317106
      WBInteraction000328369
      WBInteraction000331407
      WBInteraction000331834
      WBInteraction000334467
      WBInteraction000337006
      WBInteraction000337726
      WBInteraction000340947
      WBInteraction000340948
      WBInteraction000340949
      WBInteraction000340950
      WBInteraction000340952
      WBInteraction000342543
      WBInteraction000347454
      WBInteraction000350219
      WBInteraction000355118
      WBInteraction000357014
      WBInteraction000371304
      WBInteraction000372184
      WBInteraction000374737
      WBInteraction000375910
      WBInteraction000378104
      WBInteraction000380713
      WBInteraction000381023
      WBInteraction000381094
      WBInteraction000388025
      WBInteraction000393830
      WBInteraction000397039
      WBInteraction000397618
      WBInteraction000415102
      WBInteraction000416365
      WBInteraction000419129
      WBInteraction000419616
      WBInteraction000427301
      WBInteraction000431591
      WBInteraction000436113
      WBInteraction000438021
      WBInteraction000439514
      WBInteraction000443273
      WBInteraction000445561
      WBInteraction000448590
      WBInteraction000448638
      WBInteraction000451154
      WBInteraction000452103
      WBInteraction000452322
      WBInteraction000458983
      WBInteraction000463022
      WBInteraction000464607
      WBInteraction000464698
      WBInteraction000464997
      WBInteraction000468236
      WBInteraction000468707
      WBInteraction000469488
      WBInteraction000469538
      WBInteraction000470453
      WBInteraction000470501
      WBInteraction000470715
      WBInteraction000471521
      WBInteraction000471553
      WBInteraction000473829
      WBInteraction000473915
      WBInteraction000474170
      WBInteraction000474637
      WBInteraction000474654
      WBInteraction000475076
  Map_info: Map: V Position: 6.30412
    Positive: Positive_clone: C15H11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene