WormBase Tree Display for Gene: WBGene00001579
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WBGene00001579 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | gex-2 | Person_evidence | WBPerson419 | |||||
Sequence_name | F56A11.1 | ||||||||
Molecular_name | F56A11.1 | ||||||||
F56A11.1.1 | |||||||||
CE31351 | |||||||||
Other_name | CELE_F56A11.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | gex-2 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gex | ||||||||
Allele (162) | |||||||||
Strain | WBStrain00036391 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (22) | |||||||||
Ortholog (50) | |||||||||
Structured_description | Concise_description | The gex-2 gene encodes a homolog of p140/Sra-1, a mammalian protein ligand of the small GTPase Rac1; gex-2 is required for tissue morphogenesis and cell migrations. | Paper_evidence | WBPaper00005149 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable RNA 7-methylguanosine cap binding activity. Involved in several processes, including embryonic body morphogenesis; positive regulation of clathrin-dependent endocytosis; and positive regulation of egg-laying behavior. Located in cell junction. Part of SCAR complex. Human ortholog(s) of this gene implicated in several diseases, including Schaaf-Yang syndrome; autism spectrum disorder; and epilepsy (multiple). Is an ortholog of human CYFIP1 (cytoplasmic FMR1 interacting protein 1) and CYFIP2 (cytoplasmic FMR1 interacting protein 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0111715 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||
DOID:0080430 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13760) | ||||||
DOID:0060041 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||||
DOID:3328 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||||
DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13759) | ||||||
Molecular_info | Corresponding_CDS | F56A11.1 | |||||||
Corresponding_CDS_history | F56A11.1:wp129 | ||||||||
Corresponding_transcript | F56A11.1.1 | ||||||||
Other_sequence | JI165903.1 | ||||||||
Acan_isotig17824 | |||||||||
CR09312 | |||||||||
BMC10501_1 | |||||||||
Oden_isotig11823 | |||||||||
Dviv_isotig32180 | |||||||||
CBC01373_1 | |||||||||
Acan_isotig02715 | |||||||||
ACC18025_1 | |||||||||
EY461465.1 | |||||||||
JI170021.1 | |||||||||
MJC03997_1 | |||||||||
EX554502.1 | |||||||||
EY464671.1 | |||||||||
ACC24661_1 | |||||||||
EY464555.1 | |||||||||
EY459105.1 | |||||||||
EX553518.1 | |||||||||
EX558518.1 | |||||||||
AYC01768_1 | |||||||||
EW741821.1 | |||||||||
Dviv_isotig20624 | |||||||||
Oden_isotig11822 | |||||||||
EY464343.1 | |||||||||
Tcol_isotig16683 | |||||||||
MJ04869 | |||||||||
BMC11892_1 | |||||||||
Acan_isotig02716 | |||||||||
Acan_isotig14432 | |||||||||
Tcir_isotig08800 | |||||||||
JI459740.1 | |||||||||
JI164486.1 | |||||||||
CRC02085_1 | |||||||||
Tcol_isotig08843 | |||||||||
Tcol_isotig08842 | |||||||||
Name_isotig03210 | |||||||||
CR07949 | |||||||||
JO470886.1 | |||||||||
PPC20919_1 | |||||||||
ASC39172_1 | |||||||||
FE912684.1 | |||||||||
EX552188.1 | |||||||||
FC541846.1 | |||||||||
Dviv_isotig24026 | |||||||||
EX551480.1 | |||||||||
Dviv_isotig20623 | |||||||||
BMC02882_1 | |||||||||
EW741199.1 | |||||||||
Oden_isotig11821 | |||||||||
HG09175 | |||||||||
ACC18577_1 | |||||||||
ACC05599_1 | |||||||||
CRC03114_1 | |||||||||
CR09313 | |||||||||
Hbac_isotig02109 | |||||||||
AE03423 | |||||||||
Associated_feature | WBsf645763 | ||||||||
WBsf995193 | |||||||||
WBsf995194 | |||||||||
WBsf1016569 | |||||||||
WBsf227856 | |||||||||
WBsf227857 | |||||||||
WBsf227858 | |||||||||
WBsf227859 | |||||||||
Experimental_info | RNAi_result (33) | ||||||||
Expr_pattern | Expr1827 | ||||||||
Expr1026712 | |||||||||
Expr1030945 | |||||||||
Expr1152359 | |||||||||
Expr2012023 | |||||||||
Expr2030259 | |||||||||
Drives_construct | WBCnstr00036849 | ||||||||
Construct_product | WBCnstr00036849 | ||||||||
Antibody | WBAntibody00000462 | ||||||||
WBAntibody00000463 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (133) | |||||||||
Interaction | WBInteraction000009180 | ||||||||
WBInteraction000032873 | |||||||||
WBInteraction000033237 | |||||||||
WBInteraction000033238 | |||||||||
WBInteraction000033239 | |||||||||
WBInteraction000033411 | |||||||||
WBInteraction000033553 | |||||||||
WBInteraction000051768 | |||||||||
WBInteraction000135535 | |||||||||
WBInteraction000158048 | |||||||||
WBInteraction000158053 | |||||||||
WBInteraction000158054 | |||||||||
WBInteraction000158055 | |||||||||
WBInteraction000158056 | |||||||||
WBInteraction000158057 | |||||||||
WBInteraction000158058 | |||||||||
WBInteraction000158059 | |||||||||
WBInteraction000158060 | |||||||||
WBInteraction000158426 | |||||||||
WBInteraction000158434 | |||||||||
WBInteraction000158552 | |||||||||
WBInteraction000158622 | |||||||||
WBInteraction000158641 | |||||||||
WBInteraction000162905 | |||||||||
WBInteraction000162918 | |||||||||
WBInteraction000169398 | |||||||||
WBInteraction000173174 | |||||||||
WBInteraction000296274 | |||||||||
WBInteraction000349811 | |||||||||
WBInteraction000351042 | |||||||||
WBInteraction000360350 | |||||||||
WBInteraction000370249 | |||||||||
WBInteraction000402330 | |||||||||
WBInteraction000441523 | |||||||||
WBInteraction000443564 | |||||||||
WBInteraction000503823 | |||||||||
WBInteraction000503825 | |||||||||
WBInteraction000536176 | |||||||||
WBInteraction000541404 | |||||||||
WBInteraction000556196 | |||||||||
WBInteraction000556413 | |||||||||
WBInteraction000556414 | |||||||||
Map_info | Map | IV | Position | -24.7527 | Error | 0.274792 | |||
Positive | Positive_clone | F56A11 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5641 | |||||||
Pseudo_map_position | |||||||||
Reference (36) | |||||||||
Remark | the 3' end is on C18H7 (nucleotides 1 to 3,000) | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |