WormBase Tree Display for Gene: WBGene00020453
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WBGene00020453 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-55 | Person_evidence | WBPerson655 | |||||
Sequence_name | T12B5.6 | ||||||||
Molecular_name | T12B5.6b | ||||||||
T12B5.6a | |||||||||
CE39403 | |||||||||
T12B5.6c | |||||||||
CE51680 | |||||||||
T12B5.6b.1 | |||||||||
T12B5.6c.1 | |||||||||
Other_name | CELE_T12B5.6 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-55 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00020453 | |||||
WormFlux | gene | WBGene00020453 | |||||||
NDB | locus_tag | CELE_T12B5.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020453|UniProtKB=Q2WF55 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 188445 | |||||||
RefSeq | protein | NM_001047409.4 | |||||||
NM_001330938.4 | |||||||||
NR_138510.1 | |||||||||
TREEFAM | TREEFAM_ID | TF322360 | |||||||
TrEMBL | UniProtAcc | A0A163VTZ6 | |||||||
Q2WF55 | |||||||||
UniProt_GCRP | UniProtAcc | Q2WF55 | |||||||
RNAcentral | URSid | URS00009E1D4F | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-55 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (125) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00065179 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WBGene00083155 | Caenorhabditis remanei | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WBGene00083134 | Caenorhabditis remanei | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WBGene00042834 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
WBGene00142261 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
WBGene00088344 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
WBGene00122765 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
WBGene00083213 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00083157 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00065190 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00083192 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00065189 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00083166 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00083129 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00065183 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
CSP28.g1658 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_01469.g21102 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_01608.g22044 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_04257 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
FL83_06434 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_021039 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
GCK72_021180 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
GCK72_021457 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
WBGene00061924 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
WBGene00063323 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Paralog (222) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS (2) | ||||||||
Corresponding_CDS_history | T12B5.6:wp151 | ||||||||
T12B5.6a:wp253 | |||||||||
Corresponding_transcript | T12B5.6a | ||||||||
T12B5.6b.1 | |||||||||
T12B5.6c.1 | |||||||||
Other_sequence | Oden_isotig22831 | ||||||||
Associated_feature | WBsf991189 | ||||||||
WBsf1014150 | |||||||||
Experimental_info | RNAi_result | WBRNAi00035506 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018634 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053190 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006619 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1156782 | ||||||||
Expr2011557 | |||||||||
Expr2029795 | |||||||||
Drives_construct | WBCnstr00025127 | ||||||||
Construct_product | WBCnstr00025127 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (127) | |||||||||
Interaction | WBInteraction000236716 | ||||||||
WBInteraction000245596 | |||||||||
WBInteraction000275769 | |||||||||
WBInteraction000309184 | |||||||||
WBInteraction000313034 | |||||||||
WBInteraction000323028 | |||||||||
WBInteraction000323074 | |||||||||
WBInteraction000348841 | |||||||||
WBInteraction000364382 | |||||||||
WBInteraction000383356 | |||||||||
WBInteraction000392046 | |||||||||
WBInteraction000395647 | |||||||||
WBInteraction000403211 | |||||||||
WBInteraction000404842 | |||||||||
WBInteraction000408516 | |||||||||
WBInteraction000418711 | |||||||||
WBInteraction000432670 | |||||||||
WBInteraction000434621 | |||||||||
WBInteraction000444014 | |||||||||
WBInteraction000447883 | |||||||||
WBInteraction000461124 | |||||||||
WBInteraction000521518 | |||||||||
WBInteraction000521519 | |||||||||
WBInteraction000521535 | |||||||||
WBInteraction000521560 | |||||||||
WBInteraction000521578 | |||||||||
WBInteraction000521579 | |||||||||
Map_info | Map | III | Position | -25.0866 | Error | 0.003123 | |||
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |