WormBase Tree Display for Gene: WBGene00017016

WBGene00017016 SMap: S_parent: Sequence: D1014
  Identity: Version: 3
    Name: CGC_name: snap-1 Person_evidence: WBPerson451
      Sequence_name: D1014.3
      Molecular_name: D1014.3a
        D1014.3a.1
        CE38494
        D1014.3b
        CE53052
        D1014.3b.1
        D1014.3b.2
        D1014.3b.3
      Other_name: phi-29 Person_evidence: WBPerson2582
        CELE_D1014.3 Accession_evidence: NDB BX284605
      Public_name: snap-1
    DB_info: Database: AceView gene 5I613
        WormQTL gene WBGene00017016
        WormFlux gene WBGene00017016
        NDB locus_tag CELE_D1014.3
        Panther gene CAEEL|WormBase=WBGene00017016|UniProtKB=Q18921
          family PTHR13768
        NCBI gene 179193
        RefSeq protein NM_001392555.1
            NM_072698.7
        TrEMBL UniProtAcc A0A486WXT8
            Q18921
        UniProt_GCRP UniProtAcc Q18921
        OMIM gene 611270
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Mar 2005 13:54:35 WBPerson2970 Name_change: Other_name: phi-29
        3 07 Sep 2006 08:05:50 WBPerson2970 Name_change: CGC_name: snap-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snap
    Allele (39)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP5180
    Ortholog: WBGene00053007 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032476 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00145787 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00097591 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00176470 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00055357 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00223265 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g41 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10861 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15645 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12474 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g19055 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9906 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12933 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13887 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g9721 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g9722 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6027 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7551 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00383.g10065 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-snap-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g22181 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00098.g4206 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03650 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010834 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_018764 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05260 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05991 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g23702 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50103300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14914 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243494 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00272375 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263620 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287641 Trichuris muris From_analysis: WormBase-Compara
      WBGene00302379 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000146 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0250791 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5290 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050522-230 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060531-160 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-070112-2132 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:7641 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:15751 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:104562 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:104563 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:620855 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1589649 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00013345 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00044794 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in Alzheimer's disease; Down syndrome; and developmental and epileptic encephalopathy 107. Is an ortholog of human NAPA (NSF attachment protein alpha) and NAPB (NSF attachment protein beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070393 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:15751)
      DOID:10652 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:15751)
      DOID:14250 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:15751)
  Molecular_info: Corresponding_CDS: D1014.3a
      D1014.3b
    Corresponding_CDS_history: D1014.3:wp142
    Corresponding_transcript: D1014.3a.1
      D1014.3b.1
      D1014.3b.2
      D1014.3b.3
    Other_sequence (35)
    Associated_feature: WBsf646987
      WBsf646988
      WBsf661465
      WBsf661466
      WBsf981966
      WBsf1000585
      WBsf232064
      WBsf232065
  Experimental_info: RNAi_result (32)
    Expr_pattern: Expr5609
      Expr1016527
      Expr1037312
      Expr1147322
      Expr2015937
      Expr2034170
    Drives_construct: WBCnstr00004056
      WBCnstr00027636
    Construct_product: WBCnstr00027636
    Microarray_results (21)
    Expression_cluster (101)
    Interaction: WBInteraction000032751
      WBInteraction000033299
      WBInteraction000035135
      WBInteraction000035710
      WBInteraction000036066
      WBInteraction000036554
      WBInteraction000036681
      WBInteraction000037649
      WBInteraction000038028
      WBInteraction000038029
      WBInteraction000038307
      WBInteraction000038385
      WBInteraction000038759
      WBInteraction000038761
      WBInteraction000038763
      WBInteraction000039186
      WBInteraction000039751
      WBInteraction000039769
      WBInteraction000040925
      WBInteraction000042131
      WBInteraction000042132
      WBInteraction000043754
      WBInteraction000043886
      WBInteraction000043906
      WBInteraction000048031
      WBInteraction000050206
      WBInteraction000050502
      WBInteraction000104682
      WBInteraction000110985
      WBInteraction000112942
      WBInteraction000117859
      WBInteraction000118781
      WBInteraction000124466
      WBInteraction000124526
      WBInteraction000133491
      WBInteraction000136565
      WBInteraction000136786
      WBInteraction000143773
      WBInteraction000145520
      WBInteraction000149403
      WBInteraction000150159
      WBInteraction000151094
      WBInteraction000159712
      WBInteraction000161156
      WBInteraction000165215
      WBInteraction000167707
      WBInteraction000170049
      WBInteraction000170050
      WBInteraction000171672
      WBInteraction000185793
      WBInteraction000187000
      WBInteraction000209165
      WBInteraction000250245
      WBInteraction000255975
      WBInteraction000255978
      WBInteraction000264291
      WBInteraction000267020
      WBInteraction000274424
      WBInteraction000291716
      WBInteraction000296222
      WBInteraction000296223
      WBInteraction000300733
      WBInteraction000321867
      WBInteraction000327498
      WBInteraction000338036
      WBInteraction000338288
      WBInteraction000339405
      WBInteraction000346717
      WBInteraction000355830
      WBInteraction000388298
      WBInteraction000389684
      WBInteraction000395533
      WBInteraction000414120
      WBInteraction000428199
      WBInteraction000456500
      WBInteraction000457211
      WBInteraction000467863
      WBInteraction000536886
      WBInteraction000536940
      WBInteraction000536971
      WBInteraction000536991
      WBInteraction000537045
      WBInteraction000559152
      WBInteraction000564280
      WBInteraction000578647
  Map_info: Map: V Position: 1.04508 Error: 0.011611
    Positive: Positive_clone: D1014 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene