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WormBase Tree Display for Gene: WBGene00015915

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Name Class

WBGene00015915SMapS_parentSequenceC17G10
IdentityVersion1
NameSequence_nameC17G10.1
Molecular_nameC17G10.1
C17G10.1.1
CE01785
C17G10.1.2
Other_nameCELE_C17G10.1Accession_evidenceNDBBX284602
Public_nameC17G10.1
DB_infoDatabaseAceViewgene2F887
WormQTLgeneWBGene00015915
WormFluxgeneWBGene00015915
NDBlocus_tagCELE_C17G10.1
PanthergeneCAEEL|WormBase=WBGene00015915|UniProtKB=Q09973
familyPTHR12117
NCBIgene173947
RefSeqproteinNM_062687.9
TREEFAMTREEFAM_IDTF105920
TrEMBLUniProtAccQ09973
UniProt_GCRPUniProtAccQ09973
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (29)
StrainWBStrain00001914
RNASeq_FPKM (74)
GO_annotation (12)
Contained_in_operonCEOP2192
OrthologWBGene00025502Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00057324Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00163243Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00111404Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00191141Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00209952Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00222533Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12577Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2463Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5460Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1549Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12291Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g11852Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11299Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21452Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1098Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9194Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7100Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00121.g4947Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-C17G10.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11364Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00331.g9556Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06098Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006076Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10968Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g2129Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20110800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4554Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00217456Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00248227Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00263079Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288733Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000851Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0265189Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-3294Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:25585Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2442978Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
RGD:1308848Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to enable peptidyl-proline dioxygenase activity. Predicted to be involved in regulation of translational termination. Predicted to be located in cytoplasm. Expressed in hypodermis. Is an ortholog of human OGFOD1 (2-oxoglutarate and iron dependent oxygenase domain containing 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC17G10.1
Corresponding_transcriptC17G10.1.1
C17G10.1.2
Other_sequence (26)
Associated_featureWBsf221306
WBsf221307
Experimental_infoRNAi_resultWBRNAi00106375Inferred_automaticallyRNAi_primary
WBRNAi00010928Inferred_automaticallyRNAi_primary
WBRNAi00076145Inferred_automaticallyRNAi_primary
WBRNAi00029020Inferred_automaticallyRNAi_primary
WBRNAi00007800Inferred_automaticallyRNAi_primary
WBRNAi00077897Inferred_automaticallyRNAi_primary
WBRNAi00040835Inferred_automaticallyRNAi_primary
Expr_patternExpr2116
Expr5288
Expr1010358
Expr1036804
Expr1144879
Expr2000926
Expr2019147
Drives_constructWBCnstr00002703
WBCnstr00028459
Construct_productWBCnstr00028459
Microarray_results (21)
Expression_cluster (124)
InteractionWBInteraction000046317
WBInteraction000046319
WBInteraction000153043
WBInteraction000210510
WBInteraction000212206
WBInteraction000216455
WBInteraction000216827
WBInteraction000220471
WBInteraction000222037
WBInteraction000230254
WBInteraction000241755
WBInteraction000262048
WBInteraction000264538
WBInteraction000277586
WBInteraction000279024
WBInteraction000281279
WBInteraction000282748
WBInteraction000310978
WBInteraction000314649
WBInteraction000320790
WBInteraction000331155
WBInteraction000337593
WBInteraction000340469
WBInteraction000344196
WBInteraction000344615
WBInteraction000344753
WBInteraction000366992
WBInteraction000374052
WBInteraction000377663
WBInteraction000382683
WBInteraction000394933
WBInteraction000394947
WBInteraction000400296
WBInteraction000408971
WBInteraction000409473
WBInteraction000409741
WBInteraction000412879
WBInteraction000414506
WBInteraction000415596
WBInteraction000416757
WBInteraction000418211
WBInteraction000430620
WBInteraction000430674
WBInteraction000443958
WBInteraction000446817
WBInteraction000448837
WBInteraction000460611
WBInteraction000552475
WBInteraction000559075
WBInteraction000568110
Map_infoPositivePositive_cloneC17G10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-1.06167
ReferenceWBPaper00038491
WBPaper00055090
MethodGene