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WormBase Tree Display for Gene: WBGene00004478

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Name Class

WBGene00004478SMapS_parentSequenceF40F8
IdentityVersion1
NameCGC_namerps-9
Sequence_nameF40F8.10
Molecular_nameF40F8.10
F40F8.10.1
CE05849
Other_nameCELE_F40F8.10Accession_evidenceNDBBX284602
Public_namerps-9
DB_infoDatabaseAceViewgene2L416
WormQTLgeneWBGene00004478
WormFluxgeneWBGene00004478
NDBlocus_tagCELE_F40F8.10
PanthergeneCAEEL|WormBase=WBGene00004478|UniProtKB=Q20228
familyPTHR11831
NCBIgene174699
RefSeqproteinNM_063983.6
SwissProtUniProtAccQ20228
TREEFAMTREEFAM_IDTF300795
UniProt_GCRPUniProtAccQ20228
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
Allele (21)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rps9 using blastP
RNASeq_FPKM (74)
GO_annotation (20)
OrthologWBGene00053508Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025919Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00143190Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00136429Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00094624Pristionchus pacificusFrom_analysisOMA
WBGene00234306Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6451Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14994Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17084Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1125Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9093Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16613Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6469Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3030Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5827Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11602Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00130.g5173Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rps-9Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g16333Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01945.g24003Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18810Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005410Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02390Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22694Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20336000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5881Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248114Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00265263Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287347Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000393Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
SGD:S000006002Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0010408Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-010724-15Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:10442Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1924096Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:619889Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1566136Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:2320851Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:9089855Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00016740Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionrps-9 encodes a small ribosomal subunit S9 protein.Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in cytoplasm; nucleolus; and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS9 (ribosomal protein S9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF40F8.10
Corresponding_transcriptF40F8.10.1
Other_sequence (237)
Associated_featureWBsf650546
WBsf650547
WBsf666117
WBsf666118
WBsf666119
WBsf989631
WBsf1013165
WBsf223894
Experimental_infoRNAi_result (45)
Expr_patternExpr1026473
Expr1032281
Expr1150739
Expr2015533
Expr2033768
Microarray_results (21)
Expression_cluster (162)
InteractionWBInteraction000029872
WBInteraction000050934
WBInteraction000102711
WBInteraction000102922
WBInteraction000103360
WBInteraction000103850
WBInteraction000103972
WBInteraction000103979
WBInteraction000103985
WBInteraction000104020
WBInteraction000104094
WBInteraction000104282
WBInteraction000104919
WBInteraction000105030
WBInteraction000105084
WBInteraction000105293
WBInteraction000105319
WBInteraction000105484
WBInteraction000106019
WBInteraction000106275
WBInteraction000106286
WBInteraction000106408
WBInteraction000106431
WBInteraction000106908
WBInteraction000108296
WBInteraction000108371
WBInteraction000108372
WBInteraction000108373
WBInteraction000108374
WBInteraction000108375
WBInteraction000108376
WBInteraction000108377
WBInteraction000108378
WBInteraction000108379
WBInteraction000108380
WBInteraction000108381
WBInteraction000108382
WBInteraction000108383
WBInteraction000108384
WBInteraction000108391
WBInteraction000108468
WBInteraction000108509
WBInteraction000108536
WBInteraction000108575
WBInteraction000108614
WBInteraction000108640
WBInteraction000109231
WBInteraction000109443
WBInteraction000109464
WBInteraction000109981
WBInteraction000110155
WBInteraction000110575
WBInteraction000111418
WBInteraction000111866
WBInteraction000113240
WBInteraction000113606
WBInteraction000114547
WBInteraction000117771
WBInteraction000118329
WBInteraction000120406
WBInteraction000121680
WBInteraction000125417
WBInteraction000125418
WBInteraction000125421
WBInteraction000127986
WBInteraction000128037
WBInteraction000128097
WBInteraction000128133
WBInteraction000128166
WBInteraction000128199
WBInteraction000128460
WBInteraction000129011
WBInteraction000129149
WBInteraction000129184
WBInteraction000129262
WBInteraction000129304
WBInteraction000129337
WBInteraction000129359
WBInteraction000129375
WBInteraction000129397
WBInteraction000129426
WBInteraction000129618
WBInteraction000129619
WBInteraction000129620
WBInteraction000129621
WBInteraction000129622
WBInteraction000129623
WBInteraction000129624
WBInteraction000129625
WBInteraction000129626
WBInteraction000129627
WBInteraction000129628
WBInteraction000129629
WBInteraction000129630
WBInteraction000129631
WBInteraction000129632
WBInteraction000129633
WBInteraction000129634
WBInteraction000129635
WBInteraction000129636
WBInteraction000129637
WBInteraction000129638
WBInteraction000129639
WBInteraction000129640
WBInteraction000129641
WBInteraction000134479
WBInteraction000135045
WBInteraction000135074
WBInteraction000137384
WBInteraction000140725
WBInteraction000143240
WBInteraction000143241
WBInteraction000145432
WBInteraction000145944
WBInteraction000147369
WBInteraction000151962
WBInteraction000152726
WBInteraction000154346
WBInteraction000155024
WBInteraction000155025
WBInteraction000155026
WBInteraction000155345
WBInteraction000155408
WBInteraction000157681
WBInteraction000158499
WBInteraction000158780
WBInteraction000158781
WBInteraction000158782
WBInteraction000158783
WBInteraction000158784
WBInteraction000158785
WBInteraction000158786
WBInteraction000159319
WBInteraction000164651
WBInteraction000180740
WBInteraction000196119
WBInteraction000196574
WBInteraction000197643
WBInteraction000198343
WBInteraction000200406
WBInteraction000204484
WBInteraction000207228
WBInteraction000209228
WBInteraction000211934
WBInteraction000220844
WBInteraction000230441
WBInteraction000232362
WBInteraction000239186
WBInteraction000242105
WBInteraction000243772
WBInteraction000245502
WBInteraction000269719
WBInteraction000270886
WBInteraction000272777
WBInteraction000272968
WBInteraction000276279
WBInteraction000278852
WBInteraction000280632
WBInteraction000293135
WBInteraction000296702
WBInteraction000296829
WBInteraction000298886
WBInteraction000299259
WBInteraction000303292
WBInteraction000304260
WBInteraction000304291
WBInteraction000314116
WBInteraction000316465
WBInteraction000318445
WBInteraction000320064
WBInteraction000321572
WBInteraction000331386
WBInteraction000339067
WBInteraction000342939
WBInteraction000344025
WBInteraction000350575
WBInteraction000351874
WBInteraction000355881
WBInteraction000359735
WBInteraction000360766
WBInteraction000362284
WBInteraction000366880
WBInteraction000370523
WBInteraction000372328
WBInteraction000374326
WBInteraction000378321
WBInteraction000379169
WBInteraction000382303
WBInteraction000385912
WBInteraction000398203
WBInteraction000398593
WBInteraction000403998
WBInteraction000404874
WBInteraction000412306
WBInteraction000412731
WBInteraction000422900
WBInteraction000424629
WBInteraction000425283
WBInteraction000432708
WBInteraction000434641
WBInteraction000435008
WBInteraction000442093
WBInteraction000445662
WBInteraction000448362
WBInteraction000458098
WBInteraction000461566
WBInteraction000461784
WBInteraction000462948
WBInteraction000463124
WBInteraction000463193
WBInteraction000463858
WBInteraction000464084
WBInteraction000464871
WBInteraction000465818
WBInteraction000466045
WBInteraction000466272
WBInteraction000466815
WBInteraction000469172
WBInteraction000469926
WBInteraction000470043
WBInteraction000470078
WBInteraction000470928
WBInteraction000471548
WBInteraction000471860
WBInteraction000472301
WBInteraction000521546
WBInteraction000542699
WBInteraction000551960
WBInteraction000553991
WBInteraction000554295
WBInteraction000554417
WBInteraction000560932
WBInteraction000562039
WBInteraction000562452
WBInteraction000565635
WBInteraction000565928
WBInteraction000567518
WBInteraction000569307
WBInteraction000570069
WBInteraction000572258
WBInteraction000572639
WBInteraction000572862
WBInteraction000573562
WBInteraction000575650
WBInteraction000575954
WBInteraction000577745
WBInteraction000578596
WBInteraction000579244
WBInteraction000580353
WBInteraction000585226
WBInteraction000585998
Map_infoMapIIPosition3.319Error0.001084
PositivePositive_cloneF40F8Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene