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WormBase Tree Display for Gene: WBGene00003829

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Name Class

WBGene00003829SMapS_parentSequenceF53A2
IdentityVersion1
NameCGC_namenud-1Person_evidenceWBPerson87
Sequence_nameF53A2.4
Molecular_nameF53A2.4
F53A2.4.1
CE16096
Other_nameCELE_F53A2.4Accession_evidenceNDBBX284603
Public_namenud-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnud
Allele (18)
StrainWBStrain00035169
WBStrain00031486
RNASeq_FPKM (74)
GO_annotation (15)
Contained_in_operonCEOP3784
OrthologWBGene00061913Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00042431Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00158551Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00092177Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00136385Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00214955Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00224540Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5266Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1683Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6662Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6726Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3752Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g621Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1527Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1452Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26281Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7900Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00347.g9550Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nud-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14564Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00766.g15281Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22658Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008366Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03522Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18319Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18320Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30022100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g9324Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248513Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00261337Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287227Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0021768Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-899Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:8045Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:106014Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:3215Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
Structured_descriptionConcise_descriptionnud-1 encodes the C. elegans ortholog of the Aspergillus nidulans nudC, which mediates nuclear migration along Aspergillus hyphae.Paper_evidenceWBPaper00004895
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables identical protein binding activity and unfolded protein binding activity. Involved in several processes, including GABAergic synaptic transmission; chaperone-mediated protein folding; and establishment of organelle localization. Predicted to be located in cytoplasm. Expressed in gonad; hypodermis; intestine; and neurons. Used to study epilepsy and lissencephaly. Is an ortholog of human NUDC (nuclear distribution C, dynein complex regulator).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:1826Homo sapiensPaper_evidenceWBPaper00028525
Curator_confirmedWBPerson324
Date_last_updated24 Aug 2021 00:00:00
DOID:0050453Homo sapiensPaper_evidenceWBPaper00028525
Accession_evidenceOMIM607432
Curator_confirmedWBPerson324
Date_last_updated17 Apr 2013 00:00:00
Disease_relevanceIn humans, mutations in the LIS1 gene (Platelet activating factor acetylhydrolase, isoform 1B, alpha subunit; PAFAH1B1) and the LIS1 pathway, are implicated in Lissencephaly, a developmental abnormality associated with a failure of neuronal migration in the cerebral cortex, leading to mental retardation and epilepsy; human NDE1 and NDEL1, are effectors of LIS1; the elegans genetic model for epileptic siezures consists of lis-1 mutants that are responsive to the common seizure inducer pentylenetetrazole (PTZ) and diplay a distinct convulsive phenotype; worms depleted for LIS1 pathway components via RNA interference (NUD-1, NUD-2, DHC-1, CDK-5, and CDKA-1) also exhibited significant convulsions following PTZ treatment; further nud-1 (orthologous to human NUDC), nud-2/NDE1 and cdk-5 show significant enhancement in convulsions in a lis-1 heterozygous background when compared with the wild-type background; these animals are also less likely to recover when PTZ treatment is removed, when compared to wild-type; these studies show that while knocking down target genes (lis-1, cdk-5, and cdka-1 that function in neuronal migration), and their interacting proteins like nud-1, nud-2 and dhc-1, does not yield spontaneous convulsions in C. elegans, further alterations in the neural environment through the application of PTZ serve to pass a critical threshold within these animals.Homo sapiensPaper_evidenceWBPaper00024523
WBPaper00028525
Accession_evidenceOMIM601545
Curator_confirmedWBPerson324
Models_disease_in_annotationWBDOannot00000148
WBDOannot00001010
Molecular_infoCorresponding_CDSF53A2.4
Corresponding_transcriptF53A2.4.1
Other_sequence (82)
Associated_featureWBsf994858
WBsf994859
WBsf225989
Experimental_infoRNAi_result (22)
Expr_patternExpr2419
Expr10134
Expr1011738
Expr1031804
Expr1151858
Expr2014524
Expr2032763
Drives_constructWBCnstr00000117
Construct_productWBCnstr00007338
Microarray_results (20)
Expression_cluster (141)
InteractionWBInteraction000052650
WBInteraction000119435
WBInteraction000133388
WBInteraction000133389
WBInteraction000136878
WBInteraction000136887
WBInteraction000136896
WBInteraction000136906
WBInteraction000140877
WBInteraction000140887
WBInteraction000144242
WBInteraction000144258
WBInteraction000144264
WBInteraction000144269
WBInteraction000144277
WBInteraction000144278
WBInteraction000144279
WBInteraction000144280
WBInteraction000147222
WBInteraction000150152
WBInteraction000153193
WBInteraction000175502
WBInteraction000175512
WBInteraction000185269
WBInteraction000188294
WBInteraction000306623
WBInteraction000307649
WBInteraction000321761
WBInteraction000323675
WBInteraction000324321
WBInteraction000324756
WBInteraction000344597
WBInteraction000345601
WBInteraction000419170
WBInteraction000437993
WBInteraction000443338
WBInteraction000502053
WBInteraction000550138
WBInteraction000555320
WBInteraction000563036
WBInteraction000568798
WBInteraction000577033
WBInteraction000577656
WBInteraction000583867
WBInteraction000584214
Map_infoMapIIIPosition21.2108Error0.000119
PositivePositive_cloneF53A2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4503
4549
Pseudo_map_position
Reference (23)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene