Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00001663

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00001663SMapS_parentSequenceT19C4
IdentityVersion1
NameCGC_namegpa-1Person_evidenceWBPerson625
Sequence_nameT19C4.6
Molecular_nameT19C4.6a
T19C4.6a.1
CE06470
T19C4.6b
CE42473
T19C4.6b.1
Other_nameCELE_T19C4.6Accession_evidenceNDBBX284605
Public_namegpa-1
DB_infoDatabaseAceViewgene5L656
WormQTLgeneWBGene00001663
WormFluxgeneWBGene00001663
NDBlocus_tagCELE_T19C4.6
PanthergeneCAEEL|WormBase=WBGene00001663|UniProtKB=P28051
familyPTHR10218
NCBIgene179546
RefSeqproteinNM_001129546.4
NM_073439.3
SwissProtUniProtAccP28051
TrEMBLUniProtAccB2D6M7
UniProt_GCRPUniProtAccP28051
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgpa
Allele (53)
Legacy_information[C.elegansII] pk1 : Tc1 insertion. Also excision derivative, no detectable phenotype. Cloned: 48% identity to GPA-3; gpa-1:lacZ expressed in some amphid and phasmid neurons, spicular neurons, some anterior pharyngeal cells. [Lochrie et al. 1991; PS; NL]
StrainWBStrain00028898
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00041540Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00161376Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00158489Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00147337Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00140398Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00190049Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00160755Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00190191Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00148839Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00164171Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00144378Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00123339Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00120420Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00066585Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00070292Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00070852Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00060960Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00058761Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00064959Caenorhabditis remaneiFrom_analysisTreeFam
CBOVI.g99Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8141Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g10840Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4712Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18256Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25440Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10346Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17153Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1683Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2127Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00439.g10875Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-gpa-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold519.g2782Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00249.g7939Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16499Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016653Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00340Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13550Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50314700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15708Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00125836Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217052Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00074256Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00079428Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00280602Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00288474Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001047Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
SonicParanoid
Paralog (21)
Structured_descriptionConcise_descriptiongpa-1 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases that is involved in chemotaxis to water-soluble odorants; it is expressed in sensory neurons and in the spicule and phasmid neurons of the male tail.Curator_confirmedWBPerson48
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Expressed in several structures, including SPD; chemosensory neurons; head mesodermal cell; pharyngeal neurons; and postcloacal sensillum.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST19C4.6a
T19C4.6b
Corresponding_transcriptT19C4.6a.1
T19C4.6b.1
Other_sequenceOden_isotig14911
Dviv_isotig33463
JI238621.1
Oden_isotig14910
JO473508.1
Associated_featureWBsf669360
WBsf1001286
WBsf1001287
WBsf1020415
WBsf1020416
Experimental_infoRNAi_resultWBRNAi00053517Inferred_automaticallyRNAi_primary
WBRNAi00027599Inferred_automaticallyRNAi_primary
WBRNAi00018833Inferred_automaticallyRNAi_primary
Expr_patternExpr522
Expr1303
Expr15370
Expr1025482
Expr1157085
Expr2012190
Expr2030426
Drives_constructWBCnstr00001684
WBCnstr00004644
WBCnstr00004645
WBCnstr00004648
WBCnstr00036792
Construct_productWBCnstr00001681
WBCnstr00001684
WBCnstr00010199
WBCnstr00036792
Microarray_results (19)
Expression_cluster (149)
InteractionWBInteraction000126161
WBInteraction000126163
WBInteraction000126165
WBInteraction000126166
WBInteraction000126795
WBInteraction000127136
WBInteraction000127294
WBInteraction000127295
WBInteraction000133404
WBInteraction000133440
WBInteraction000134867
WBInteraction000139145
WBInteraction000147253
WBInteraction000147254
WBInteraction000165176
WBInteraction000165177
WBInteraction000180426
WBInteraction000180428
WBInteraction000180430
WBInteraction000218495
WBInteraction000218499
WBInteraction000280664
WBInteraction000301792
WBInteraction000502743
WBInteraction000555702
WBInteraction000555703
WBInteraction000561011
WBProcessWBbiopr:00000017
Map_infoMapVPosition2.96783Error0.001182
PositivePositive_clonePS#25A12
T19C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (49)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene