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WormBase Tree Display for Gene: WBGene00001235

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Name Class

WBGene00001235SMapS_parentSequenceY41C4A
IdentityVersion1
NameCGC_nameelb-1Person_evidenceWBPerson322
Sequence_nameY41C4A.10
Molecular_nameY41C4A.10
Y41C4A.10.1
CE20250
Other_name3L686Accession_evidenceEMBLAF326942
CELE_Y41C4A.10Accession_evidenceNDBBX284603
Public_nameelb-1
DB_infoDatabaseAceViewgene3M808
WormQTLgeneWBGene00001235
WormFluxgeneWBGene00001235
NDBlocus_tagCELE_Y41C4A.10
PanthergeneCAEEL|WormBase=WBGene00001235|UniProtKB=G5ECR7
familyPTHR13248
NCBIgene176605
RefSeqproteinNM_067116.7
TREEFAMTREEFAM_IDTF325964
TrEMBLUniProtAccG5ECR7
UniProt_GCRPUniProtAccG5ECR7
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:23WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classelb
Allele (15)
StrainWBStrain00051184
RNASeq_FPKM (74)
GO_annotation00012393
00012394
00012395
00012396
00012397
00108490
00108491
00108492
Contained_in_operonCEOP3728
OrthologWBGene00063070Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034027Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149795Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131899Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00226773Brugia malayiFrom_analysisWormBase-Compara
CSP21.g1986Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6298Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8461Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11272Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21057Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14132Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13747Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5360Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1898Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24602Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20582Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00001.g117Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-elb-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold488.g1993Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02986.g28659Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17630Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010262Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30093800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g9079Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00211444Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244340Onchocerca volvulusFrom_analysisWormBase-Compara
FB:FBgn0023212Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:11619Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1914923Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
MGI:1860403Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
RGD:621200Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
RGD:1564031Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
RGD:41101549Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
Structured_descriptionConcise_descriptionelb-1 encodes an Elongin B ortholog required for chromosome condensationand segregation during mitosis and meiotic division II, and also for cellproliferation (probably through degradation of CKI-1); elb-1(RNAi) animalstend to arrest at the second meiotic cell division, with escapers showingmany other defects in chromosomal dynamics and cell cycle control such asabnormal pronuclear rotation and cortical protrusion, aberrant chromosomalstructures in the intestine, and deficient germ cell proliferation; ELB-1interacts with ELC-1 and ELC-2 in bacterial two-hybrid experiments.Paper_evidenceWBPaper00026616
Curator_confirmedWBPerson567
Date_last_updated23 Aug 2006 00:00:00
Automated_descriptionEnables protein domain specific binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Part of Cul2-RING ubiquitin ligase complex. Is an ortholog of human ELOB (elongin B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY41C4A.10
Corresponding_transcriptY41C4A.10.1
Other_sequenceAF326942
CBC12953_1
CRC11177_1
Associated_featureWBsf651515
WBsf994473
WBsf227594
Experimental_infoRNAi_result (39)
Expr_patternExpr1016832
Expr1030783
Expr1159837
Expr2011270
Expr2029506
Microarray_results (19)
Expression_cluster (96)
InteractionWBInteraction000009447
WBInteraction000030466
WBInteraction000030467
WBInteraction000105455
WBInteraction000118840
WBInteraction000125022
WBInteraction000127618
WBInteraction000127746
WBInteraction000127752
WBInteraction000127804
WBInteraction000127826
WBInteraction000128233
WBInteraction000128234
WBInteraction000128235
WBInteraction000128236
WBInteraction000128237
WBInteraction000128238
WBInteraction000128334
WBInteraction000128357
WBInteraction000130390
WBInteraction000130407
WBInteraction000130705
WBInteraction000130861
WBInteraction000131222
WBInteraction000131656
WBInteraction000131675
WBInteraction000131691
WBInteraction000131745
WBInteraction000131830
WBInteraction000131943
WBInteraction000132323
WBInteraction000132452
WBInteraction000132563
WBInteraction000132602
WBInteraction000132670
WBInteraction000132773
WBInteraction000132871
WBInteraction000132885
WBInteraction000149053
WBInteraction000155463
WBInteraction000156215
WBInteraction000158023
WBInteraction000158024
WBInteraction000166834
WBInteraction000169202
WBInteraction000182754
WBInteraction000217877
WBInteraction000300571
WBInteraction000314380
WBInteraction000331916
WBInteraction000362378
WBInteraction000444246
WBInteraction000504671
WBInteraction000516537
WBInteraction000521111
WBInteraction000522333
WBInteraction000522937
WBInteraction000522938
WBInteraction000522939
WBInteraction000522940
WBInteraction000522941
WBInteraction000523063
WBInteraction000540057
WBInteraction000540058
WBInteraction000540076
WBInteraction000541852
WBInteraction000548878
WBInteraction000552150
WBInteraction000561479
WBInteraction000567411
WBInteraction000568047
WBInteraction000568519
WBInteraction000568935
WBInteraction000576542
WBInteraction000579981
WBInteraction000584913
Map_infoMapIIIPosition12.0059Error0.028827
PositivePositive_cloneY41C4AInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024321
WBPaper00024458
WBPaper00026616
WBPaper00027315
WBPaper00030834
WBPaper00037728
WBPaper00038491
WBPaper00041771
WBPaper00048493
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene