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WormBase Tree Display for Gene: WBGene00018613

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Name Class

WBGene00018613SMapS_parentSequenceF48E8
IdentityVersion2
NameCGC_nameskpt-1Person_evidenceWBPerson322
Sequence_nameF48E8.7
Molecular_nameF48E8.7a
F48E8.7a.1
CE28404
F48E8.7b
CE01959
F48E8.7b.1
Other_nameCELE_F48E8.7Accession_evidenceNDBBX284603
Public_nameskpt-1
DB_infoDatabaseAceViewgene3G536
WormQTLgeneWBGene00018613
WormFluxgeneWBGene00018613
NDBlocus_tagCELE_F48E8.7
PanthergeneCAEEL|WormBase=WBGene00018613|UniProtKB=Q09397
familyPTHR16134
NCBIgene175749
RefSeqproteinNM_171865.7
NM_171121.5
TREEFAMTREEFAM_IDTF352582
TrEMBLUniProtAccQ8MQ34
Q09397
UniProt_GCRPUniProtAccQ09397
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
202 Feb 2006 09:28:57WBPerson2970Name_changeCGC_nameskpt-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskpt
Allele (24)
StrainWBStrain00031667
RNASeq_FPKM (74)
GO_annotation00053688
00053689
Ortholog (30)
Paralog (22)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains leucine-rich repeats.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in breast cancer; carcinoma (multiple); and uterine disease (multiple). Is an ortholog of human SKP2 (S-phase kinase associated protein 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050866Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:8991Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:5409Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:2671Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:0080365Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:10286Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:4450Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:10283Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
DOID:1612Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10901)
Molecular_infoCorresponding_CDSF48E8.7a
F48E8.7b
Corresponding_transcriptF48E8.7a.1
F48E8.7b.1
Other_sequenceCGC01410_1
CBC05615_1
CRC00200_1
CR02293
CJC16333_1
CR10212
CRC01355_1
Associated_featureWBsf651047
WBsf651048
WBsf976147
WBsf976148
WBsf976149
WBsf226682
Experimental_infoRNAi_resultWBRNAi00047756Inferred_automaticallyRNAi_primary
WBRNAi00032491Inferred_automaticallyRNAi_primary
WBRNAi00005292Inferred_automaticallyRNAi_primary
WBRNAi00015255Inferred_automaticallyRNAi_primary
Expr_patternExpr1023194
Expr1038013
Expr1151588
Expr2015837
Expr2034070
Drives_constructWBCnstr00026383
Construct_productWBCnstr00026383
Microarray_resultsSMD_F48E8.7
181221_s_at
A_12_P103742
Aff_F48E8.7
GPL13394_WBGene00018613
GPL13914_F48E8.7
GPL14144_F48E8.7a_649-708_0.904_2_B
GPL14144_F48E8.7a_718-777_0.894_3_C
GPL14144_F48E8.7a_791-850_0.924_1_A
GPL19516_CGZ0022593
GPL19516_CGZ0022594
GPL21109_F48E8.7a
GPL3518_CE01959
GPL8304_CE_WBGene00018613_A
GPL8673_F48E8_7aP00503
GPL8673_F48E8_7aP01029
GPL8673_F48E8_7aP01090
GPL8673_F48E8_7bP00494
GPL8673_F48E8_7bP01020
GPL8673_F48E8_7bP01081
GPL9450_F48E8.7a
GPL9450_F48E8.7b
cea2.d.03643
cea2.d.27017
cea2.d.27031
Expression_cluster (182)
InteractionWBInteraction000031599
WBInteraction000042586
WBInteraction000118874
WBInteraction000121425
WBInteraction000136075
WBInteraction000147499
WBInteraction000152006
WBInteraction000152478
WBInteraction000157234
WBInteraction000159438
WBInteraction000159439
WBInteraction000159829
WBInteraction000161209
WBInteraction000163054
WBInteraction000163055
WBInteraction000163616
WBInteraction000164384
WBInteraction000164681
WBInteraction000164992
WBInteraction000165105
WBInteraction000167060
WBInteraction000167062
WBInteraction000167082
WBInteraction000169838
WBInteraction000169848
WBInteraction000170045
WBInteraction000170083
WBInteraction000170084
WBInteraction000170128
WBInteraction000174464
WBInteraction000176490
WBInteraction000181618
WBInteraction000181777
WBInteraction000183411
WBInteraction000183412
WBInteraction000187307
WBInteraction000188440
WBInteraction000189084
WBInteraction000190909
WBInteraction000190933
WBInteraction000192951
WBInteraction000194048
WBInteraction000195816
WBInteraction000197458
WBInteraction000197564
WBInteraction000197834
WBInteraction000198406
WBInteraction000198674
WBInteraction000200052
WBInteraction000200515
WBInteraction000200885
WBInteraction000202328
WBInteraction000202445
WBInteraction000205735
WBInteraction000206853
WBInteraction000209478
WBInteraction000209582
WBInteraction000211773
WBInteraction000212780
WBInteraction000214166
WBInteraction000216390
WBInteraction000219692
WBInteraction000219825
WBInteraction000220463
WBInteraction000221006
WBInteraction000221873
WBInteraction000222164
WBInteraction000223922
WBInteraction000224957
WBInteraction000225178
WBInteraction000225189
WBInteraction000225535
WBInteraction000228086
WBInteraction000228734
WBInteraction000228988
WBInteraction000229057
WBInteraction000230941
WBInteraction000231141
WBInteraction000232109
WBInteraction000233967
WBInteraction000234532
WBInteraction000236053
WBInteraction000236973
WBInteraction000237276
WBInteraction000238751
WBInteraction000240342
WBInteraction000241757
WBInteraction000242984
WBInteraction000246768
WBInteraction000246946
WBInteraction000247072
WBInteraction000247352
WBInteraction000250236
WBInteraction000253337
WBInteraction000254299
WBInteraction000255206
WBInteraction000255613
WBInteraction000255800
WBInteraction000256684
WBInteraction000256695
WBInteraction000256999
WBInteraction000257033
WBInteraction000257297
WBInteraction000257302
WBInteraction000257308
WBInteraction000257880
WBInteraction000258225
WBInteraction000260993
WBInteraction000261133
WBInteraction000262454
WBInteraction000262515
WBInteraction000267585
WBInteraction000267649
WBInteraction000267842
WBInteraction000268913
WBInteraction000269638
WBInteraction000270537
WBInteraction000271326
WBInteraction000272402
WBInteraction000274286
WBInteraction000274766
WBInteraction000274907
WBInteraction000275242
WBInteraction000277753
WBInteraction000278044
WBInteraction000278093
WBInteraction000279060
WBInteraction000281337
WBInteraction000281928
WBInteraction000281965
WBInteraction000283408
WBInteraction000283847
WBInteraction000285928
WBInteraction000286409
WBInteraction000287263
WBInteraction000288072
WBInteraction000290903
WBInteraction000290921
WBInteraction000291825
WBInteraction000291949
WBInteraction000295638
WBInteraction000297355
WBInteraction000297536
WBInteraction000297733
WBInteraction000298900
WBInteraction000299134
WBInteraction000300140
WBInteraction000300195
WBInteraction000301253
WBInteraction000303235
WBInteraction000304671
WBInteraction000306746
WBInteraction000311852
WBInteraction000311869
WBInteraction000312615
WBInteraction000314643
WBInteraction000315022
WBInteraction000315753
WBInteraction000316354
WBInteraction000316779
WBInteraction000321226
WBInteraction000321833
WBInteraction000322490
WBInteraction000324248
WBInteraction000326931
WBInteraction000327247
WBInteraction000327964
WBInteraction000330735
WBInteraction000332478
WBInteraction000338487
WBInteraction000338560
WBInteraction000338600
WBInteraction000340111
WBInteraction000342275
WBInteraction000343174
WBInteraction000343384
WBInteraction000344599
WBInteraction000348146
WBInteraction000348501
WBInteraction000352580
WBInteraction000354044
WBInteraction000354221
WBInteraction000354682
WBInteraction000356868
WBInteraction000356943
WBInteraction000358308
WBInteraction000359721
WBInteraction000361621
WBInteraction000362141
WBInteraction000363152
WBInteraction000370439
WBInteraction000373599
WBInteraction000374474
WBInteraction000378320
WBInteraction000378481
WBInteraction000381001
WBInteraction000382236
WBInteraction000382439
WBInteraction000383088
WBInteraction000383900
WBInteraction000384911
WBInteraction000385365
WBInteraction000387514
WBInteraction000389396
WBInteraction000390406
WBInteraction000393734
WBInteraction000397116
WBInteraction000397873
WBInteraction000399145
WBInteraction000399634
WBInteraction000402867
WBInteraction000406291
WBInteraction000408253
WBInteraction000411765
WBInteraction000412040
WBInteraction000412899
WBInteraction000414495
WBInteraction000416747
WBInteraction000417404
WBInteraction000418051
WBInteraction000418421
WBInteraction000418541
WBInteraction000419073
WBInteraction000419499
WBInteraction000420216
WBInteraction000420256
WBInteraction000422644
WBInteraction000422879
WBInteraction000424409
WBInteraction000425559
WBInteraction000426381
WBInteraction000433726
WBInteraction000435814
WBInteraction000437673
WBInteraction000437762
WBInteraction000438098
WBInteraction000439436
WBInteraction000440220
WBInteraction000442044
WBInteraction000444030
WBInteraction000445322
WBInteraction000445982
WBInteraction000447011
WBInteraction000447323
WBInteraction000447625
WBInteraction000448404
WBInteraction000457779
WBInteraction000459021
WBInteraction000459120
WBInteraction000459197
WBInteraction000459403
WBInteraction000459617
WBInteraction000460386
WBInteraction000461312
WBInteraction000461586
WBInteraction000550010
Map_infoMapIIIPosition-1.69036Error0.012144
PositivePositive_cloneF48E8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
WBPaper00028040
WBPaper00028868
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene