WormBase Tree Display for Gene: WBGene00004016

WBGene00004016 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: CGC_name: phf-5 Person_evidence: WBPerson564
      Sequence_name: Y54F10BM.14
      Molecular_name: Y54F10BM.14
        Y54F10BM.14.1
        CE33882
      Other_name: CELE_Y54F10BM.14 Accession_evidence: NDB BX284603
      Public_name: phf-5
    DB_info: Database: AceView gene 3D429
        WormQTL gene WBGene00004016
        WormFlux gene WBGene00004016
        NDB locus_tag CELE_Y54F10BM.14
        Panther gene CAEEL|WormBase=WBGene00004016|UniProtKB=G5EBY6
          family PTHR13120
        NCBI gene 3564851
        RefSeq protein NM_001027738.2
        TREEFAM TREEFAM_ID TF105627
        TrEMBL UniProtAcc G5EBY6
        UniProt_GCRP UniProtAcc G5EBY6
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: phf
    Allele (119)
    Strain: WBStrain00006460
      WBStrain00055484
    RNASeq_FPKM (74)
    GO_annotation: 00010542
      00010543
      00010544
      00010545
      00010546
      00112195
    Contained_in_operon: CEOP3075
    Ortholog (34)
    Structured_description: Automated_description: Predicted to be involved in mRNA splicing, via spliceosome. Located in cytoplasm and nucleus. Expressed in body wall musculature; intestine; pharyngeal muscle cell; pharynx; and rectal muscle. Is an ortholog of human PHF5A (PHD finger protein 5A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54F10BM.14
    Corresponding_transcript: Y54F10BM.14.1
    Other_sequence (66)
    Associated_feature: WBsf658509
      WBsf991497
      WBsf991498
      WBsf1014393
      WBsf224500
    Transcription_factor: WBTranscriptionFactor000668
  Experimental_info: RNAi_result: WBRNAi00022700 Inferred_automatically: RNAi_primary
      WBRNAi00022702 Inferred_automatically: RNAi_primary
      WBRNAi00117630 Inferred_automatically: RNAi_primary
      WBRNAi00022701 Inferred_automatically: RNAi_primary
      WBRNAi00117629 Inferred_automatically: RNAi_primary
      WBRNAi00106641 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2000
      Expr1024301
      Expr1031923
      Expr1160845
      Expr2014897
      Expr2033133
    Drives_construct: WBCnstr00000421
      WBCnstr00000431
    Antibody: WBAntibody00000558
    Microarray_results: A_12_P104804
      GPL13394_WBGene00004016
      GPL13914_Y54F10BM.14
      GPL14144_Y54F10BM.14_109-168_0.862_12_C
      GPL14144_Y54F10BM.14_181-240_0.946_1_A
      GPL14144_Y54F10BM.14_256-315_0.929_3_B
      GPL19516_CGZ0049115
      GPL21109_Y54F10BM.14
      GPL8304_CE_WBGene00004016_A
      GPL8304_CE_WBGene00004016_B
      GPL8673_Y54F10BM_14P00034
      GPL8673_Y54F10BM_14P00102
      GPL8673_Y54F10BM_14P00146
      GPL9450_Y54F10BM.1
      cea2.i.22048
    Expression_cluster (60)
    Interaction: WBInteraction000042984
      WBInteraction000049339
      WBInteraction000049340
      WBInteraction000108941
      WBInteraction000113627
      WBInteraction000125384
      WBInteraction000125422
      WBInteraction000125437
      WBInteraction000125439
      WBInteraction000125442
      WBInteraction000125446
      WBInteraction000125453
      WBInteraction000125579
      WBInteraction000127627
      WBInteraction000127776
      WBInteraction000127856
      WBInteraction000127900
      WBInteraction000128260
      WBInteraction000128284
      WBInteraction000128376
      WBInteraction000128409
      WBInteraction000128535
      WBInteraction000128599
      WBInteraction000128662
      WBInteraction000128710
      WBInteraction000128722
      WBInteraction000128723
      WBInteraction000128724
      WBInteraction000128725
      WBInteraction000128726
      WBInteraction000128727
      WBInteraction000128728
      WBInteraction000128786
      WBInteraction000128860
      WBInteraction000128909
      WBInteraction000128941
      WBInteraction000128968
      WBInteraction000130125
      WBInteraction000130154
      WBInteraction000130190
      WBInteraction000130581
      WBInteraction000130601
      WBInteraction000130650
      WBInteraction000130717
      WBInteraction000130871
      WBInteraction000130960
      WBInteraction000131036
      WBInteraction000131232
      WBInteraction000131324
      WBInteraction000131378
      WBInteraction000131414
      WBInteraction000131486
      WBInteraction000131553
      WBInteraction000131638
      WBInteraction000131694
      WBInteraction000131726
      WBInteraction000131747
      WBInteraction000131764
      WBInteraction000131774
      WBInteraction000131842
      WBInteraction000131954
      WBInteraction000132037
      WBInteraction000132139
      WBInteraction000132203
      WBInteraction000132279
      WBInteraction000132333
      WBInteraction000132409
      WBInteraction000132460
      WBInteraction000132535
      WBInteraction000132677
      WBInteraction000132797
      WBInteraction000132847
      WBInteraction000132887
      WBInteraction000132936
      WBInteraction000144057
      WBInteraction000144972
      WBInteraction000144976
      WBInteraction000147479
      WBInteraction000158398
      WBInteraction000158620
      WBInteraction000159158
      WBInteraction000159484
      WBInteraction000186501
      WBInteraction000186522
      WBInteraction000186552
      WBInteraction000186604
      WBInteraction000187917
      WBInteraction000289125
      WBInteraction000320170
      WBInteraction000340707
      WBInteraction000340723
      WBInteraction000340768
      WBInteraction000361592
      WBInteraction000566413
      WBInteraction000566692
      WBInteraction000567688
      WBInteraction000580250
  Map_info: Map: III Position: -14.7412 Error: 0.009142
    Positive: Positive_clone: Y54F10BM Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005466
    WBPaper00027309
    WBPaper00038491
    WBPaper00055090
    WBPaper00065308
  Remark: phf-5 was previously connected to Y54F10BM.1 [Blasiar D][030411 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene