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WormBase Tree Display for Gene: WBGene00021074

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Name Class

WBGene00021074SMapS_parentSequenceW07E6
IdentityVersion2
NameCGC_namegldi-1Person_evidenceWBPerson6609
WBPerson1816
Sequence_nameW07E6.2
Molecular_nameW07E6.2a
W07E6.2a.1
CE17294
W07E6.2b
CE51055
W07E6.2b.1
Other_nameCELE_W07E6.2Accession_evidenceNDBBX284602
Public_namegldi-1
DB_infoDatabaseAceViewgene2A772
WormQTLgeneWBGene00021074
SignaLinkproteinWBGene00021074
WormFluxgeneWBGene00021074
NDBlocus_tagCELE_W07E6.2
PanthergeneCAEEL|WormBase=WBGene00021074|UniProtKB=Q9TYV3
familyPTHR19848
NCBIgene173439
RefSeqproteinNM_001316868.3
NM_061344.5
TrEMBLUniProtAccQ9TYV3
A0A0M9JJ65
UniProt_GCRPUniProtAccQ9TYV3
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
205 May 2023 12:43:53WBPerson51134Name_changeCGC_namegldi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgldi
Allele (59)
RNASeq_FPKM (74)
GO_annotation00001779
00001780
00097677
00097678
00097679
OrthologWBGene00029232Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00161511Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00064193Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00130823Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00233947Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g7750Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9320Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8434Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18282Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17549Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25735Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g912Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21373Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g7997Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22608Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00290.g8598Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-W07E6.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold605.g5662Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02260.g25674Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15718Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_007978Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13588Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g7166Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20000600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g3123Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00078430Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00078434Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00255520Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00304260Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00304269Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263885Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286107Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000668Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0021874Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050522-321Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:19889Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2429770Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1308301Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionW07E6.2 encodes an ortholog of S. cerevisiae RSA4 that may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, W07E6.2 is probably required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line.Paper_evidenceWBPaper00028280
WBPaper00028933
Curator_confirmedWBPerson567
Date_last_updated23 Apr 2008 00:00:00
Automated_descriptionPredicted to be involved in Notch signaling pathway. Predicted to be located in nucleolus. Is an ortholog of human NLE1 (notchless homolog 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW07E6.2a
W07E6.2b
Corresponding_transcriptW07E6.2a.1
W07E6.2b.1
Other_sequence (55)
Associated_featureWBsf649825
WBsf665327
WBsf665328
WBsf986418
WBsf1011400
WBsf222609
WBsf222610
Experimental_infoRNAi_result (15)
Expr_patternExpr1021160
Expr1039193
Expr1158484
Expr2006840
Expr2025065
Microarray_resultsSMD_W07E6.2
182218_s_at
A_12_P109136
Aff_W07E6.2
GPL13394_WBGene00021074
GPL13914_W07E6.2
GPL14144_W07E6.2_1296-1355_0.956_1_C
GPL14144_W07E6.2_1372-1431_0.925_7_B
GPL14144_W07E6.2_383-442_0.831_47_A
GPL19516_CGZ0038721
GPL21109_W07E6.2
GPL3518_CE17294
GPL8304_CE_WBGene00021074_A
GPL8673_W07E6_2P00348
GPL8673_W07E6_2P00803
GPL8673_W07E6_2P01079
GPL9450_W07E6.2
cea2.p.48721
Expression_cluster (122)
InteractionWBInteraction000035907
WBInteraction000035908
WBInteraction000035909
WBInteraction000035956
WBInteraction000037742
WBInteraction000038321
WBInteraction000040357
WBInteraction000042913
WBInteraction000044342
WBInteraction000044348
WBInteraction000044355
WBInteraction000047414
WBInteraction000047415
WBInteraction000048562
WBInteraction000119200
WBInteraction000119826
WBInteraction000120152
WBInteraction000121075
WBInteraction000127556
WBInteraction000133711
WBInteraction000135838
WBInteraction000138420
WBInteraction000142872
WBInteraction000145356
WBInteraction000150028
WBInteraction000160432
WBInteraction000160710
WBInteraction000161208
WBInteraction000164180
WBInteraction000168092
WBInteraction000175020
WBInteraction000176537
WBInteraction000178554
WBInteraction000182268
WBInteraction000182703
WBInteraction000183033
WBInteraction000191470
WBInteraction000195852
WBInteraction000195963
WBInteraction000198171
WBInteraction000198451
WBInteraction000198600
WBInteraction000204739
WBInteraction000212135
WBInteraction000213066
WBInteraction000214625
WBInteraction000215137
WBInteraction000219701
WBInteraction000219859
WBInteraction000226068
WBInteraction000226518
WBInteraction000228383
WBInteraction000236984
WBInteraction000237097
WBInteraction000243453
WBInteraction000243654
WBInteraction000244072
WBInteraction000244560
WBInteraction000246558
WBInteraction000252483
WBInteraction000253348
WBInteraction000255194
WBInteraction000260414
WBInteraction000260458
WBInteraction000261671
WBInteraction000262756
WBInteraction000264158
WBInteraction000270073
WBInteraction000272822
WBInteraction000274422
WBInteraction000281664
WBInteraction000283748
WBInteraction000287247
WBInteraction000292375
WBInteraction000297132
WBInteraction000298271
WBInteraction000302272
WBInteraction000305198
WBInteraction000305364
WBInteraction000307570
WBInteraction000310102
WBInteraction000317037
WBInteraction000323280
WBInteraction000327923
WBInteraction000328093
WBInteraction000332191
WBInteraction000347805
WBInteraction000354880
WBInteraction000356979
WBInteraction000359223
WBInteraction000362708
WBInteraction000367281
WBInteraction000369022
WBInteraction000372902
WBInteraction000374421
WBInteraction000375503
WBInteraction000376813
WBInteraction000382232
WBInteraction000382576
WBInteraction000385677
WBInteraction000388655
WBInteraction000398088
WBInteraction000408890
WBInteraction000413541
WBInteraction000416417
WBInteraction000416430
WBInteraction000418372
WBInteraction000422692
WBInteraction000425007
WBInteraction000425709
WBInteraction000428771
WBInteraction000433872
WBInteraction000433873
WBInteraction000435884
WBInteraction000442354
WBInteraction000444396
WBInteraction000447193
WBInteraction000450063
WBInteraction000456133
WBInteraction000457000
WBInteraction000461009
WBInteraction000461348
WBInteraction000462321
WBInteraction000463365
WBInteraction000463700
WBInteraction000464296
WBInteraction000464596
WBInteraction000464597
WBInteraction000465413
WBInteraction000466687
WBInteraction000469306
WBInteraction000469855
WBInteraction000470098
WBInteraction000470467
WBInteraction000470916
WBInteraction000471279
WBInteraction000471862
WBInteraction000472030
WBInteraction000472337
WBInteraction000472671
WBInteraction000473803
WBInteraction000474294
WBInteraction000474678
WBInteraction000474801
WBInteraction000474873
WBInteraction000475193
WBInteraction000583517
Map_infoMapIIPosition-15.6026
PositivePositive_cloneW07E6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00028280
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene